Variant report

Variant	rs72659089
Chromosome Location	chr4:79670481-79670482
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs72659092	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72659096	0.87[EUR][1000 genomes]
rs72659097	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72660906	1.00[AFR][1000 genomes]
rs7666364	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803379	chr4:79661618-79704210	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv1792021	chr4:79661618-79784245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79668400-79671600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:79668600-79671600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:79669000-79670600	Enhancers	Fetal Heart	heart
4	chr4:79669000-79671600	Enhancers	Osteobl	bone
5	chr4:79669400-79675400	Enhancers	Primary B cells from peripheral blood	blood
6	chr4:79669800-79670600	Enhancers	GM12878-XiMat	blood
7	chr4:79669800-79670800	Enhancers	Fetal Muscle Leg	muscle
8	chr4:79669800-79670800	Enhancers	Left Ventricle	heart
9	chr4:79669800-79672600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr4:79670000-79671200	Enhancers	NHDF-Ad	bronchial
11	chr4:79670200-79671200	Weak transcription	NHLF	lung
12	chr4:79670200-79671600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:79670200-79675400	Enhancers	Primary B cells from cord blood	blood
14	chr4:79670400-79670600	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr4:79670400-79671800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr4:79670400-79671800	Enhancers	HSMMtube	muscle
17	chr4:79670400-79671800	Enhancers	K562	blood
18	chr4:79670400-79672200	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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