Variant report

Variant	rs72659096
Chromosome Location	chr4:79718448-79718449
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79498073..79500124-chr4:79717103..79719533,2	K562	blood:
2	chr4:79550103..79553175-chr4:79717288..79720915,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs72659089	0.87[EUR][1000 genomes]
rs72659092	0.97[EUR][1000 genomes]
rs72659097	1.00[EUR][1000 genomes]
rs72660906	0.87[EUR][1000 genomes]
rs72660907	0.87[EUR][1000 genomes]
rs72660909	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792021	chr4:79661618-79784245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1011365	chr4:79714695-79779723	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79699400-79722600	Weak transcription	Fetal Thymus	thymus
2	chr4:79700200-79732800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:79701600-79719200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:79702000-79731200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:79703000-79720800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:79703200-79720800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:79703400-79720800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:79705600-79731200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:79706000-79720000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:79706000-79720200	Weak transcription	Primary T cells from cord blood	blood
11	chr4:79706000-79720200	Weak transcription	NHEK	skin
12	chr4:79706000-79720800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr4:79706200-79722200	Weak transcription	HSMM	muscle
14	chr4:79706600-79722800	Weak transcription	Brain Substantia Nigra	brain
15	chr4:79707000-79721000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr4:79707600-79721800	Weak transcription	Fetal Muscle Leg	muscle
17	chr4:79707800-79720800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr4:79707800-79720800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:79708200-79719000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:79708800-79719000	Weak transcription	Right Atrium	heart
21	chr4:79709000-79720800	Weak transcription	NHLF	lung
22	chr4:79709200-79723800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr4:79709200-79731200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr4:79709400-79724000	Weak transcription	Fetal Intestine Small	intestine
25	chr4:79709600-79720600	Weak transcription	Osteobl	bone
26	chr4:79709600-79721400	Weak transcription	Brain Anterior Caudate	brain
27	chr4:79710000-79720200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr4:79710000-79720600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr4:79710400-79725200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:79711000-79720800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr4:79714400-79748400	Weak transcription	Aorta	Aorta
32	chr4:79715400-79730400	Weak transcription	Left Ventricle	heart
33	chr4:79716400-79720800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr4:79716600-79719000	Weak transcription	K562	blood
35	chr4:79716600-79721200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr4:79716600-79726200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr4:79716600-79726800	Weak transcription	Fetal Intestine Large	intestine
38	chr4:79716800-79718800	Weak transcription	Primary B cells from cord blood	blood
39	chr4:79716800-79726200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr4:79717600-79718600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr4:79717600-79721200	Enhancers	Primary B cells from peripheral blood	blood
42	chr4:79717800-79718800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr4:79717800-79719600	Enhancers	GM12878-XiMat	blood
44	chr4:79718200-79719600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr4:79718200-79721200	Weak transcription	NHDF-Ad	bronchial
46	chr4:79718400-79718800	Enhancers	Fetal Heart	heart
47	chr4:79718400-79721200	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr4:79718400-79725400	Weak transcription	Primary hematopoietic stem cells	blood
49	chr4:79718400-79726200	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links