Variant report

Variant	rs72659097
Chromosome Location	chr4:79721095-79721096
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79720788..79722594-chr4:79731131..79733817,2	MCF-7	breast:
2	chr4:79719962..79721538-chr4:79737317..79739683,2	K562	blood:
3	chr4:79718867..79721352-chr4:79723446..79725108,2	K562	blood:
4	chr4:79542792..79544409-chr4:79720591..79722991,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs72659089	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72659092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72659096	1.00[EUR][1000 genomes]
rs72660906	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72660907	0.87[EUR][1000 genomes]
rs72660909	0.87[EUR][1000 genomes]
rs7666364	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792021	chr4:79661618-79784245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1011365	chr4:79714695-79779723	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79699400-79722600	Weak transcription	Fetal Thymus	thymus
2	chr4:79700200-79732800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:79702000-79731200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:79705600-79731200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr4:79706200-79722200	Weak transcription	HSMM	muscle
6	chr4:79706600-79722800	Weak transcription	Brain Substantia Nigra	brain
7	chr4:79707600-79721800	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:79709200-79723800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr4:79709200-79731200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:79709400-79724000	Weak transcription	Fetal Intestine Small	intestine
11	chr4:79709600-79721400	Weak transcription	Brain Anterior Caudate	brain
12	chr4:79710400-79725200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:79714400-79748400	Weak transcription	Aorta	Aorta
14	chr4:79715400-79730400	Weak transcription	Left Ventricle	heart
15	chr4:79716600-79721200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:79716600-79726200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:79716600-79726800	Weak transcription	Fetal Intestine Large	intestine
18	chr4:79716800-79726200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr4:79717600-79721200	Enhancers	Primary B cells from peripheral blood	blood
20	chr4:79718200-79721200	Weak transcription	NHDF-Ad	bronchial
21	chr4:79718400-79721200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr4:79718400-79725400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr4:79718400-79726200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr4:79718800-79721200	Weak transcription	Fetal Heart	heart
25	chr4:79718800-79721600	Genic enhancers	Primary B cells from cord blood	blood
26	chr4:79719400-79726400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr4:79719600-79721400	Weak transcription	Right Atrium	heart
28	chr4:79719600-79727000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr4:79719800-79722800	Enhancers	K562	blood
30	chr4:79720200-79721400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr4:79720600-79721400	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr4:79720600-79721400	Flanking Active TSS	GM12878-XiMat	blood
33	chr4:79720600-79721400	Flanking Active TSS	NHEK	skin
34	chr4:79720600-79722400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr4:79720600-79730000	Weak transcription	Primary T cells from cord blood	blood
36	chr4:79720800-79721200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr4:79720800-79721400	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr4:79720800-79721400	Enhancers	HepG2	liver
39	chr4:79720800-79721600	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr4:79720800-79721600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr4:79720800-79721600	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr4:79720800-79721600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr4:79720800-79721600	Enhancers	NHLF	lung
44	chr4:79720800-79721800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr4:79720800-79721800	Enhancers	HMEC	breast
46	chr4:79720800-79722200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr4:79720800-79722400	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr4:79720800-79747800	Weak transcription	Osteobl	bone
49	chr4:79721000-79721200	Enhancers	Thymus	Thymus
50	chr4:79721000-79721400	Enhancers	Psoas Muscle	Psoas

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