Variant report
| Variant | rs72664097 |
|---|---|
| Chromosome Location | chr8:63014266-63014267 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:63008246..63010935-chr8:63011772..63014314,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs16918904 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs16918906 | 0.97[EUR][1000 genomes] |
| rs16928235 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs16928320 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs16928330 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs60322521 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs72662689 | 0.83[AMR][1000 genomes] |
| rs72664004 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs72664043 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs72664051 | 0.97[EUR][1000 genomes] |
| rs72664091 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs72666305 | 0.83[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs72666306 | 0.94[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs72666307 | 0.89[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs72666308 | 0.89[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs72666309 | 0.89[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs72666310 | 0.89[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs72666317 | 0.89[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs72666319 | 0.89[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs72666321 | 0.89[AMR][1000 genomes];0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv890954 | chr8:62919691-63023132 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv890955 | chr8:62919691-63062581 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1032321 | chr8:62954064-63026567 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:63013600-63014400 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
