Variant report

Variant	rs72664875
Chromosome Location	chr14:35681549-35681550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:35680408..35687771-chr14:35868773..35877509,15	MCF-7	breast:
2	chr14:35680464..35682083-chr14:35684601..35686665,2	MCF-7	breast:
3	chr14:35678489..35680179-chr14:35680593..35684377,3	MCF-7	breast:
4	chr14:35681343..35684647-chr14:35685694..35689200,4	MCF-7	breast:
5	chr14:35680958..35685764-chr14:35872472..35876074,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100906	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs45557631	1.00[AFR][1000 genomes]
rs72664811	1.00[AFR][1000 genomes]
rs72664837	1.00[AFR][1000 genomes]
rs72680648	1.00[AFR][1000 genomes]
rs72680655	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1043470	chr14:35398522-35754029	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv542031	chr14:35398522-35754029	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv564264	chr14:35482797-35732369	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv1044515	chr14:35510785-35756317	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	nsv1046992	chr14:35527239-35724227	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv1051274	chr14:35529529-35724227	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	nsv1048823	chr14:35537281-35724892	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	nsv542032	chr14:35537281-35724892	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv1040540	chr14:35537481-35724753	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	nsv542033	chr14:35537481-35724753	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	nsv1050123	chr14:35546114-35724892	Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	nsv542034	chr14:35546114-35724892	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	nsv1043692	chr14:35548276-35720016	Weak transcription Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	nsv1053604	chr14:35548276-35825805	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
17	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
18	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35643400-35724000	Weak transcription	Left Ventricle	heart
2	chr14:35650400-35682200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:35650600-35702600	Weak transcription	Liver	Liver
4	chr14:35650800-35707800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr14:35655800-35691800	Weak transcription	Psoas Muscle	Psoas
6	chr14:35660400-35683200	Weak transcription	HSMMtube	muscle
7	chr14:35661000-35683400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:35661000-35690000	Weak transcription	Fetal Stomach	stomach
9	chr14:35661000-35736400	Weak transcription	Fetal Intestine Small	intestine
10	chr14:35661400-35682200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr14:35661600-35683000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:35666200-35681800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr14:35666200-35683600	Weak transcription	GM12878-XiMat	blood
14	chr14:35666400-35682200	Weak transcription	HSMM	muscle
15	chr14:35666400-35682400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr14:35666400-35682400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr14:35666400-35683000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr14:35667800-35682000	Weak transcription	NHEK	skin
19	chr14:35667800-35682800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr14:35670800-35691800	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr14:35672000-35742200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr14:35672200-35690200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr14:35672200-35700000	Weak transcription	Thymus	Thymus
24	chr14:35673200-35688400	Weak transcription	Fetal Thymus	thymus
25	chr14:35673400-35688200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr14:35673600-35691200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr14:35673800-35682600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr14:35674000-35682000	Weak transcription	HepG2	liver
29	chr14:35674200-35681800	Weak transcription	Primary T cells from cord blood	blood
30	chr14:35674400-35698600	Weak transcription	Dnd41	blood
31	chr14:35674400-35699600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr14:35674400-35711200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr14:35674800-35688000	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr14:35674800-35737000	Weak transcription	Lung	lung
35	chr14:35675600-35691400	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr14:35675600-35692200	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr14:35675600-35699200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr14:35678000-35719600	Weak transcription	Primary B cells from peripheral blood	blood
39	chr14:35679600-35699400	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr14:35679800-35692000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr14:35679800-35699800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr14:35680000-35698600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr14:35680200-35691600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr14:35680400-35682800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr14:35680400-35691800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr14:35680800-35688200	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr14:35680800-35729800	Weak transcription	Primary B cells from cord blood	blood
48	chr14:35681000-35729800	Weak transcription	Duodenum Mucosa	Duodenum
49	chr14:35681200-35682600	Weak transcription	NHLF	lung
50	chr14:35681400-35681600	Enhancers	Aorta	Aorta

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