Variant report

Variant	rs72665795
Chromosome Location	chr4:87733153-87733154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:87694942..87697515-chr4:87732040..87733923,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10012566	0.84[ASN][1000 genomes]
rs10050311	0.87[EUR][1000 genomes]
rs11561681	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11930396	0.94[ASN][1000 genomes]
rs12171458	0.86[ASN][1000 genomes]
rs17012072	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17420607	0.81[AMR][1000 genomes]
rs17420966	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17454662	0.81[AMR][1000 genomes]
rs17694112	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2054592	0.81[AMR][1000 genomes]
rs2230600	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2287147	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4263359	0.80[AMR][1000 genomes]
rs4693150	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4693152	0.93[ASN][1000 genomes]
rs4693780	0.80[AMR][1000 genomes]
rs4693784	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55670248	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67867077	0.80[AMR][1000 genomes]
rs72665791	0.81[AMR][1000 genomes]
rs7658220	0.91[ASN][1000 genomes]
rs7688019	0.91[ASN][1000 genomes]
rs9307026	0.92[ASN][1000 genomes]
rs969734	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830001	chr4:87585278-87748643	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87635200-87737400	Weak transcription	Fetal Brain Male	brain
2	chr4:87639400-87739200	Weak transcription	A549	lung
3	chr4:87642400-87735800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr4:87661600-87737800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:87689400-87738200	Weak transcription	Gastric	stomach
6	chr4:87690000-87738800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:87690800-87736000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:87692800-87734200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:87694400-87735600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:87696800-87733600	Weak transcription	NHLF	lung
11	chr4:87698600-87738600	Weak transcription	Brain Angular Gyrus	brain
12	chr4:87712000-87736600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr4:87712600-87733600	Weak transcription	Lung	lung
14	chr4:87712600-87735800	Weak transcription	Brain Germinal Matrix	brain
15	chr4:87712600-87737600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:87712600-87738400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr4:87712600-87751400	Weak transcription	Aorta	Aorta
18	chr4:87712800-87736400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr4:87712800-87737000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:87712800-87739600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr4:87715800-87737400	Weak transcription	Colon Smooth Muscle	Colon
22	chr4:87717200-87737000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:87719200-87738600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr4:87719400-87738000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr4:87720000-87736200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr4:87721800-87733600	Weak transcription	Fetal Stomach	stomach
27	chr4:87722600-87736400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr4:87723800-87736200	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr4:87723800-87736200	Weak transcription	Fetal Brain Female	brain
30	chr4:87724000-87737000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr4:87724600-87737600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:87724800-87734400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr4:87724800-87736400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr4:87725000-87734000	Strong transcription	NHDF-Ad	bronchial
35	chr4:87725800-87733200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr4:87725800-87739200	Weak transcription	Hela-S3	cervix
37	chr4:87726600-87735600	Weak transcription	NH-A	brain
38	chr4:87727200-87736400	Weak transcription	Left Ventricle	heart
39	chr4:87727600-87733200	Strong transcription	Fetal Kidney	kidney
40	chr4:87727800-87737200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr4:87728200-87736200	Weak transcription	Fetal Intestine Small	intestine
42	chr4:87728400-87736400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr4:87728600-87734200	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr4:87728600-87734200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr4:87728600-87734400	Strong transcription	Ovary	ovary
46	chr4:87728600-87735200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr4:87728600-87736400	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr4:87728600-87737200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr4:87728600-87737200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr4:87728600-87737800	Strong transcription	HMEC	breast

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