Variant report

Variant	rs72665867
Chromosome Location	chr4:89928725-89928726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10516826	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1513820	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17015025	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17768752	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17769356	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17770293	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17819929	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17820320	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1921680	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2175821	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2280099	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2869974	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3822085	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs5026462	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55885459	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55987745	0.81[ASN][1000 genomes]
rs55996516	0.84[AMR][1000 genomes]
rs56038841	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56165603	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56672432	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56719325	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59188553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59283403	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59586695	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60213126	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60591238	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60751124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62306393	0.84[ASN][1000 genomes]
rs6822256	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72665841	0.82[EUR][1000 genomes]
rs72665855	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72665868	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72665882	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72665892	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72665898	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72665902	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72668111	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72668112	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72668120	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72668125	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72668127	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72668130	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72668134	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72668135	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72668138	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72668144	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72668152	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72668154	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72668156	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72668157	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72668165	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72668167	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72668171	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72668179	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72668183	0.84[AMR][1000 genomes]
rs7660709	0.83[ASN][1000 genomes]
rs7669140	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7689498	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8582	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009354	chr4:89725914-89985155	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv998651	chr4:89800245-89933445	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv537175	chr4:89800245-89933445	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1007025	chr4:89837734-90098046	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv537176	chr4:89837734-90098046	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv461577	chr4:89904124-89986326	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv594807	chr4:89904124-89986326	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:89896800-89934800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:89903000-89957200	Weak transcription	HSMM	muscle
3	chr4:89903400-89936000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:89909800-89931200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:89911400-89930400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:89912200-89935800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:89912200-89943800	Weak transcription	Psoas Muscle	Psoas
8	chr4:89913400-89930800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:89913400-89944000	Weak transcription	Gastric	stomach
10	chr4:89920400-89937000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr4:89921000-89930000	Weak transcription	Liver	Liver
12	chr4:89921000-89950600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr4:89922400-89936000	Weak transcription	Adipose Nuclei	Adipose
14	chr4:89922600-89932600	Weak transcription	NHDF-Ad	bronchial
15	chr4:89922600-89935000	Weak transcription	Placenta	Placenta
16	chr4:89922600-89936800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:89922600-89949800	Weak transcription	HMEC	breast
18	chr4:89922800-89931800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:89922800-89935800	Weak transcription	HUVEC	blood vessel
20	chr4:89922800-89945600	Weak transcription	A549	lung
21	chr4:89923000-89932200	Weak transcription	Osteobl	bone
22	chr4:89923000-89935000	Weak transcription	Fetal Kidney	kidney
23	chr4:89923400-89939400	Weak transcription	Primary T cells from cord blood	blood
24	chr4:89923600-89930800	Weak transcription	Small Intestine	intestine
25	chr4:89923600-89945600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr4:89923800-89928800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr4:89923800-89930400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr4:89923800-89936000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr4:89923800-89936000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr4:89923800-89937000	Weak transcription	Fetal Heart	heart
31	chr4:89923800-89943800	Weak transcription	Right Atrium	heart
32	chr4:89923800-89944400	Weak transcription	Colon Smooth Muscle	Colon
33	chr4:89924400-89934000	Weak transcription	Fetal Brain Female	brain
34	chr4:89925000-89931600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr4:89925400-89937000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr4:89925600-89939400	Weak transcription	Aorta	Aorta
37	chr4:89926000-89936000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr4:89926200-89936400	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr4:89926400-89928800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr4:89926400-89933600	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr4:89926400-89949600	Weak transcription	Left Ventricle	heart
42	chr4:89926600-89928800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr4:89926600-89941000	Weak transcription	Esophagus	oesophagus
44	chr4:89926800-89928800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr4:89926800-89935200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr4:89926800-89951400	Weak transcription	Right Ventricle	heart
47	chr4:89927200-89929000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr4:89927200-89929000	Strong transcription	Fetal Muscle Leg	muscle
49	chr4:89927400-89928800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr4:89927400-89928800	Strong transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links