Variant report

Variant	rs72666669
Chromosome Location	chr8:99653338-99653339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:99653262..99655750-chr8:99658407..99661209,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10755896	0.88[ASN][1000 genomes]
rs10755897	0.88[ASN][1000 genomes]
rs12550012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12550783	0.88[ASN][1000 genomes]
rs12675964	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12677183	0.83[ASN][1000 genomes]
rs12679268	0.88[ASN][1000 genomes]
rs13269932	0.82[ASN][1000 genomes]
rs13271844	0.83[ASN][1000 genomes]
rs34114299	0.84[ASN][1000 genomes]
rs34477118	0.82[ASN][1000 genomes]
rs34855977	0.82[ASN][1000 genomes]
rs4509292	0.88[ASN][1000 genomes]
rs4517094	0.83[ASN][1000 genomes]
rs4612309	0.80[ASN][1000 genomes]
rs4734410	0.86[ASN][1000 genomes]
rs4735569	0.87[ASN][1000 genomes]
rs62535404	0.83[ASN][1000 genomes]
rs62535408	0.86[ASN][1000 genomes]
rs62535410	0.86[ASN][1000 genomes]
rs62535412	0.83[ASN][1000 genomes]
rs6651182	0.84[ASN][1000 genomes]
rs67186645	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6992925	0.87[ASN][1000 genomes]
rs72666694	0.83[AMR][1000 genomes]
rs7816638	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027362	chr8:99469281-99715845	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv539689	chr8:99469281-99715845	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99621800-99663000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:99630000-99662600	Weak transcription	Pancreas	Pancrea
3	chr8:99634400-99658000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:99636200-99654000	Weak transcription	Lung	lung
5	chr8:99636200-99662600	Weak transcription	Fetal Intestine Small	intestine
6	chr8:99636200-99682400	Weak transcription	Fetal Stomach	stomach
7	chr8:99636400-99659200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr8:99636600-99662800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:99637400-99656800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr8:99638200-99655600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr8:99638200-99671200	Weak transcription	GM12878-XiMat	blood
12	chr8:99641200-99656200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr8:99643800-99659200	Weak transcription	HSMMtube	muscle
14	chr8:99644200-99659000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:99646400-99659200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr8:99647800-99662600	Weak transcription	Fetal Lung	lung
17	chr8:99652400-99656000	Weak transcription	Esophagus	oesophagus
18	chr8:99652400-99658200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr8:99652400-99659200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr8:99652600-99659000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:99652600-99680600	Weak transcription	NHEK	skin

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