Variant report

Variant	rs72666699
Chromosome Location	chr8:99778077-99778078
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10504986	1.00[ASN][1000 genomes]
rs10504987	1.00[ASN][1000 genomes]
rs16897050	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897058	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897069	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16897112	1.00[ASN][1000 genomes]
rs16897115	1.00[ASN][1000 genomes]
rs16897117	1.00[ASN][1000 genomes]
rs16897119	1.00[ASN][1000 genomes]
rs16897121	1.00[ASN][1000 genomes]
rs16897122	1.00[ASN][1000 genomes]
rs16897123	1.00[ASN][1000 genomes]
rs16897128	1.00[ASN][1000 genomes]
rs17374005	1.00[ASN][1000 genomes]
rs34329419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4554439	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4574821	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55708865	1.00[ASN][1000 genomes]
rs55793219	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55807423	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55878650	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55892905	1.00[ASN][1000 genomes]
rs55899553	1.00[ASN][1000 genomes]
rs55921088	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55933347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55939044	1.00[ASN][1000 genomes]
rs55947965	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55999827	1.00[ASN][1000 genomes]
rs56088337	1.00[ASN][1000 genomes]
rs56099380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56185259	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56246659	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56285208	1.00[ASN][1000 genomes]
rs56290864	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56356780	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67954509	1.00[ASN][1000 genomes]
rs6994994	1.00[ASN][1000 genomes]
rs7012298	1.00[ASN][1000 genomes]
rs7012465	1.00[ASN][1000 genomes]
rs72666623	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666624	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666625	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666629	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666633	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666638	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666642	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666643	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666649	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666652	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666655	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666661	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666665	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666666	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666673	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666676	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666678	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666680	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666684	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666685	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666688	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666689	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666690	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72668403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72668407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72668412	1.00[ASN][1000 genomes]
rs72668417	1.00[ASN][1000 genomes]
rs72668419	1.00[ASN][1000 genomes]
rs72668423	1.00[ASN][1000 genomes]
rs72668425	1.00[ASN][1000 genomes]
rs72668426	1.00[ASN][1000 genomes]
rs72668428	1.00[ASN][1000 genomes]
rs72668430	1.00[ASN][1000 genomes]
rs72668442	1.00[ASN][1000 genomes]
rs72668446	1.00[ASN][1000 genomes]
rs72668447	1.00[ASN][1000 genomes]
rs72668449	1.00[ASN][1000 genomes]
rs72668453	1.00[ASN][1000 genomes]
rs72668455	1.00[ASN][1000 genomes]
rs72668456	1.00[ASN][1000 genomes]
rs72668457	1.00[ASN][1000 genomes]
rs72668458	1.00[ASN][1000 genomes]
rs72668460	1.00[ASN][1000 genomes]
rs72668461	1.00[ASN][1000 genomes]
rs72668464	1.00[ASN][1000 genomes]
rs72668467	1.00[ASN][1000 genomes]
rs72668480	1.00[ASN][1000 genomes]
rs7817630	1.00[ASN][1000 genomes]
rs7820829	1.00[ASN][1000 genomes]
rs7835203	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842869	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1027025	chr8:99672977-100115315	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv539690	chr8:99672977-100115315	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv891220	chr8:99681858-99867419	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv1025685	chr8:99706280-99826236	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv539691	chr8:99706280-99826236	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1031089	chr8:99715785-100399935	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99741600-99794200	Weak transcription	Pancreas	Pancrea
2	chr8:99746600-99789400	Weak transcription	Psoas Muscle	Psoas
3	chr8:99757400-99778600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr8:99758600-99794200	Weak transcription	Lung	lung
5	chr8:99759200-99778200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:99759200-99778800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:99759200-99781600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:99759200-99794400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr8:99759400-99778200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:99759400-99784400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:99759800-99793400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr8:99763800-99794200	Weak transcription	NHLF	lung
13	chr8:99766000-99793200	Weak transcription	Primary T cells from cord blood	blood
14	chr8:99766800-99787600	Weak transcription	GM12878-XiMat	blood
15	chr8:99768000-99780200	Weak transcription	Brain Anterior Caudate	brain
16	chr8:99769400-99782400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr8:99769400-99782600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr8:99769400-99787600	Weak transcription	Ovary	ovary
19	chr8:99770200-99780600	Weak transcription	HepG2	liver
20	chr8:99770600-99778200	Weak transcription	Fetal Intestine Small	intestine
21	chr8:99772800-99781000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr8:99773000-99793000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr8:99773200-99791400	Weak transcription	A549	lung
24	chr8:99774600-99793000	Weak transcription	Osteobl	bone
25	chr8:99774800-99779600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:99775200-99780000	Weak transcription	K562	blood
27	chr8:99775200-99793000	Weak transcription	Brain Hippocampus Middle	brain
28	chr8:99775400-99792800	Weak transcription	Primary B cells from cord blood	blood
29	chr8:99775600-99788000	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr8:99775600-99796200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr8:99776000-99778400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr8:99776000-99779000	Strong transcription	Liver	Liver
33	chr8:99776200-99778600	Weak transcription	Colon Smooth Muscle	Colon
34	chr8:99776200-99780400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr8:99776400-99779000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr8:99776400-99779200	Strong transcription	Placenta	Placenta
37	chr8:99776400-99779400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr8:99776400-99779600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr8:99776400-99779600	Weak transcription	Fetal Thymus	thymus
40	chr8:99776400-99781400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr8:99776400-99788400	Weak transcription	Esophagus	oesophagus
42	chr8:99776600-99779000	Strong transcription	NHEK	skin
43	chr8:99776600-99779400	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr8:99776600-99779600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr8:99776600-99787600	Weak transcription	Hela-S3	cervix
46	chr8:99776600-99798600	Weak transcription	Fetal Heart	heart
47	chr8:99776800-99779000	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr8:99776800-99779200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr8:99776800-99779200	Strong transcription	Primary hematopoietic stem cells	blood
50	chr8:99776800-99779400	Strong transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links