Variant report

Variant	rs72667721
Chromosome Location	chr4:87840797-87840798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:87840562..87842094-chr4:87856459..87858099,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172493	Chromatin interaction
ENSG00000163633	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10015639	0.93[EUR][1000 genomes]
rs1010902	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1010903	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10516786	0.93[EUR][1000 genomes]
rs11097124	0.86[EUR][1000 genomes]
rs1447994	0.81[EUR][1000 genomes]
rs17012170	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17012200	0.95[EUR][1000 genomes]
rs17012213	0.95[EUR][1000 genomes]
rs17012216	0.95[EUR][1000 genomes]
rs17751427	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17751557	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1985944	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2053771	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4693153	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4693154	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4693795	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55698195	0.90[EUR][1000 genomes]
rs55831707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55851914	0.95[EUR][1000 genomes]
rs56201068	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61651372	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6531941	0.93[EUR][1000 genomes]
rs72667703	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72667705	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72667716	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72667724	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72667727	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72667735	0.95[EUR][1000 genomes]
rs72667736	0.95[EUR][1000 genomes]
rs72667737	0.95[EUR][1000 genomes]
rs72667739	0.95[EUR][1000 genomes]
rs72667741	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1013308	chr4:87769694-87870168	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv508297	chr4:87778783-87868508	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1009937	chr4:87795314-88008345	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
5	nsv980228	chr4:87834452-87845024	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87825600-87846000	Weak transcription	Gastric	stomach
2	chr4:87825600-87849400	Weak transcription	Lung	lung
3	chr4:87825600-87849400	Weak transcription	Spleen	Spleen
4	chr4:87825800-87843600	Weak transcription	Brain Anterior Caudate	brain
5	chr4:87825800-87854800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr4:87825800-87854800	Weak transcription	Right Ventricle	heart
7	chr4:87825800-87855200	Weak transcription	Fetal Stomach	stomach
8	chr4:87826000-87852400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr4:87826200-87841000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:87826200-87843000	Weak transcription	Liver	Liver
11	chr4:87826200-87843400	Weak transcription	Brain Substantia Nigra	brain
12	chr4:87829800-87855000	Weak transcription	Aorta	Aorta
13	chr4:87830200-87849600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr4:87830200-87855200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr4:87830400-87847600	Weak transcription	Thymus	Thymus
16	chr4:87830400-87847800	Weak transcription	Psoas Muscle	Psoas
17	chr4:87830400-87849400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr4:87830400-87854600	Weak transcription	Brain Hippocampus Middle	brain
19	chr4:87830600-87843000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr4:87830600-87843400	Weak transcription	Colon Smooth Muscle	Colon
21	chr4:87830600-87843400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr4:87830600-87845600	Weak transcription	Left Ventricle	heart
23	chr4:87831000-87855000	Weak transcription	Fetal Lung	lung
24	chr4:87831400-87854400	Weak transcription	Fetal Heart	heart
25	chr4:87831400-87854800	Weak transcription	Right Atrium	heart
26	chr4:87832200-87854800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr4:87835200-87849000	Weak transcription	Pancreas	Pancrea
28	chr4:87837000-87841800	Enhancers	K562	blood
29	chr4:87837200-87854400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr4:87838400-87843800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr4:87838400-87855000	Weak transcription	Colonic Mucosa	Colon
32	chr4:87838600-87844000	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr4:87838800-87843000	Weak transcription	Hela-S3	cervix
34	chr4:87838800-87844000	Enhancers	NHDF-Ad	bronchial
35	chr4:87839000-87850200	Enhancers	Placenta	Placenta
36	chr4:87839200-87841000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr4:87839200-87841200	Enhancers	Fetal Intestine Large	intestine
38	chr4:87839400-87841200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr4:87839400-87841400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr4:87839400-87841800	Enhancers	Osteobl	bone
41	chr4:87839600-87841400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr4:87839600-87843800	Weak transcription	Fetal Intestine Small	intestine
43	chr4:87839600-87844000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr4:87839600-87844000	Enhancers	Muscle Satellite Cultured Cells	--
45	chr4:87839600-87844200	Enhancers	Primary monocytes fromperipheralblood	blood
46	chr4:87839600-87847600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr4:87839800-87842800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr4:87840000-87841000	Weak transcription	NHEK	skin
49	chr4:87840000-87842000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr4:87840000-87842000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links