Variant report
Variant | rs72668412 |
---|---|
Chromosome Location | chr8:99862471-99862472 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:5 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr8:99838397..99840004-chr8:99859824..99862546,2 | K562 | blood: | |
2 | chr8:99836010..99840004-chr8:99859824..99865808,6 | K562 | blood: | |
3 | chr8:99856529..99858632-chr8:99860340..99863288,2 | MCF-7 | breast: | |
4 | chr8:99860608..99863580-chr8:100024523..100026292,2 | MCF-7 | breast: | |
5 | chr8:99859755..99861740-chr8:99862365..99864769,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000253948 | Chromatin interaction |
ENSG00000104375 | Chromatin interaction |
ENSG00000132549 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10504986 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10504987 | 1.00[ASN][1000 genomes] |
rs16897111 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs16897112 | 1.00[ASN][1000 genomes] |
rs16897115 | 1.00[ASN][1000 genomes] |
rs16897117 | 1.00[ASN][1000 genomes] |
rs16897119 | 1.00[ASN][1000 genomes] |
rs16897121 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs16897122 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs16897123 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs16897128 | 1.00[ASN][1000 genomes] |
rs17374005 | 1.00[ASN][1000 genomes] |
rs34329419 | 0.81[EUR][1000 genomes] |
rs4554439 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs4574821 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs55708865 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55807423 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs55878650 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55892905 | 1.00[ASN][1000 genomes] |
rs55899553 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs55933347 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55939044 | 1.00[ASN][1000 genomes] |
rs55947965 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs55999827 | 1.00[ASN][1000 genomes] |
rs56088337 | 1.00[ASN][1000 genomes] |
rs56099380 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56185259 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs56246659 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs56285208 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56290864 | 1.00[ASN][1000 genomes] |
rs56356780 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs67954509 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6994994 | 1.00[ASN][1000 genomes] |
rs7010279 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs7012298 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7012465 | 1.00[ASN][1000 genomes] |
rs72666652 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs72666655 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs72666661 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs72666665 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs72666666 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs72666673 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs72666676 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs72666678 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs72666680 | 1.00[ASN][1000 genomes] |
rs72666684 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs72666685 | 1.00[ASN][1000 genomes] |
rs72666688 | 1.00[ASN][1000 genomes] |
rs72666689 | 1.00[ASN][1000 genomes] |
rs72666690 | 1.00[ASN][1000 genomes] |
rs72666699 | 1.00[ASN][1000 genomes] |
rs72668403 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72668407 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72668417 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72668419 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72668423 | 1.00[ASN][1000 genomes] |
rs72668425 | 1.00[ASN][1000 genomes] |
rs72668426 | 1.00[ASN][1000 genomes] |
rs72668428 | 1.00[ASN][1000 genomes] |
rs72668430 | 1.00[ASN][1000 genomes] |
rs72668442 | 1.00[ASN][1000 genomes] |
rs72668446 | 1.00[ASN][1000 genomes] |
rs72668447 | 1.00[ASN][1000 genomes] |
rs72668449 | 1.00[ASN][1000 genomes] |
rs72668453 | 1.00[ASN][1000 genomes] |
rs72668455 | 1.00[ASN][1000 genomes] |
rs72668456 | 1.00[ASN][1000 genomes] |
rs72668457 | 1.00[ASN][1000 genomes] |
rs72668458 | 1.00[ASN][1000 genomes] |
rs72668460 | 1.00[ASN][1000 genomes] |
rs72668461 | 1.00[ASN][1000 genomes] |
rs72668464 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72668467 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72668480 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs72668495 | 1.00[ASN][1000 genomes] |
rs72670210 | 1.00[ASN][1000 genomes] |
rs7817630 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7820829 | 1.00[ASN][1000 genomes] |
rs7835203 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs7842869 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv891218 | chr8:99507313-99906221 | Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
2 | nsv1027025 | chr8:99672977-100115315 | Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
3 | nsv539690 | chr8:99672977-100115315 | Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
4 | nsv891220 | chr8:99681858-99867419 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
5 | nsv1031089 | chr8:99715785-100399935 | Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:99838800-99862800 | Weak transcription | Ovary | ovary |
2 | chr8:99859800-99879600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
3 | chr8:99860200-99862800 | Weak transcription | K562 | blood |