Variant report

Variant	rs72669109
Chromosome Location	chr8:110523207-110523208
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:110520565..110523239-chr8:110549875..110552142,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147654	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10093885	0.86[EUR][1000 genomes]
rs10100944	0.84[EUR][1000 genomes]
rs11778756	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11784792	0.87[EUR][1000 genomes]
rs11785973	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12541569	0.81[AFR][1000 genomes]
rs12543415	0.81[AFR][1000 genomes]
rs13438836	0.89[EUR][1000 genomes]
rs1563581	0.80[EUR][1000 genomes]
rs17368044	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17375750	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17445342	0.85[EUR][1000 genomes]
rs17446406	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1892761	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28491535	0.85[EUR][1000 genomes]
rs55800074	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55932317	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55959787	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56109503	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56379526	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59237049	0.86[EUR][1000 genomes]
rs6469255	0.84[EUR][1000 genomes]
rs6982826	0.80[EUR][1000 genomes]
rs6995033	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999170	0.80[EUR][1000 genomes]
rs7000579	0.91[AFR][1000 genomes]
rs7008100	0.91[AFR][1000 genomes]
rs7008687	0.84[EUR][1000 genomes]
rs72669111	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669122	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669124	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669127	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669129	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669131	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684719	0.84[EUR][1000 genomes]
rs72684799	0.89[EUR][1000 genomes]
rs72687010	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72687015	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7813648	0.81[AFR][1000 genomes]
rs7816624	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7817639	0.89[EUR][1000 genomes]
rs7820734	0.89[EUR][1000 genomes]
rs7834361	0.80[AFR][1000 genomes]
rs7835131	0.80[EUR][1000 genomes]
rs7836433	0.83[EUR][1000 genomes]
rs7839394	0.81[AFR][1000 genomes]
rs7842842	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9656791	0.85[EUR][1000 genomes]
rs9656881	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891281	chr8:110450092-110558622	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links