Variant report

Variant	rs72670432
Chromosome Location	chr4:121198421-121198422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10434036	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12502638	0.87[AMR][1000 genomes]
rs12508080	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12508228	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1509000	0.81[ASN][1000 genomes]
rs2662694	0.82[ASN][1000 genomes]
rs2662707	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2662726	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2662748	0.86[ASN][1000 genomes]
rs2662753	0.81[ASN][1000 genomes]
rs2715979	0.84[ASN][1000 genomes]
rs2715981	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2715986	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2715987	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6812275	0.90[AMR][1000 genomes]
rs72670468	0.87[AMR][1000 genomes]
rs7662676	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7674589	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307485	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv595333	chr4:121093248-121440368	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1005240	chr4:121093285-121420997	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121198000-121199200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr4:121198000-121199200	Enhancers	Fetal Lung	lung
3	chr4:121198200-121199000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:121198400-121198800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr4:121198400-121199000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr4:121198400-121199000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:121198400-121199000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:121198400-121199000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:121198400-121199200	Enhancers	Brain Germinal Matrix	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links