Variant report

Variant	rs72675929
Chromosome Location	chr1:76692267-76692268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12057631	0.87[EUR][1000 genomes]
rs12082216	0.87[EUR][1000 genomes]
rs17098419	0.87[EUR][1000 genomes]
rs17098442	0.87[EUR][1000 genomes]
rs17098448	0.87[EUR][1000 genomes]
rs17098450	0.87[EUR][1000 genomes]
rs56023908	0.87[EUR][1000 genomes]
rs56401231	0.87[EUR][1000 genomes]
rs58321145	0.87[EUR][1000 genomes]
rs72675931	0.87[EUR][1000 genomes]
rs72675934	1.00[EUR][1000 genomes]
rs72675937	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72675938	0.87[EUR][1000 genomes]
rs72675942	0.87[EUR][1000 genomes]
rs72675945	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1008763	chr1:76692057-76723417	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1001452	chr1:76692057-76724652	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76687400-76695000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:76689000-76693800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr1:76689800-76692400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:76690000-76694800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:76690600-76692400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:76692000-76694400	Weak transcription	HUVEC	blood vessel
7	chr1:76692200-76693000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr1:76692200-76693000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:76692200-76693800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:76692200-76696000	Enhancers	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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