Variant report

Variant	rs72681229
Chromosome Location	chr14:77760322-77760323
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77745473..77748358-chr14:77758547..77761208,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000009830	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs17105658	0.86[AMR][1000 genomes]
rs17105674	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2302831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55886156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55891221	0.82[EUR][1000 genomes]
rs56018212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56091500	0.82[EUR][1000 genomes]
rs56403921	0.82[EUR][1000 genomes]
rs6574364	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72681222	0.86[AMR][1000 genomes]
rs72681225	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681227	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681243	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72681261	0.82[EUR][1000 genomes]
rs72681262	0.82[EUR][1000 genomes]
rs72681264	0.82[EUR][1000 genomes]
rs72681270	0.82[EUR][1000 genomes]
rs72681275	0.82[EUR][1000 genomes]
rs72681276	0.82[EUR][1000 genomes]
rs72681278	0.82[EUR][1000 genomes]
rs72681279	0.82[EUR][1000 genomes]
rs72681280	0.82[EUR][1000 genomes]
rs72681281	0.82[EUR][1000 genomes]
rs72681283	0.82[EUR][1000 genomes]
rs72681284	0.82[EUR][1000 genomes]
rs8177546	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8177560	0.81[EUR][1000 genomes]
rs8177565	0.81[EUR][1000 genomes]
rs8177567	0.81[EUR][1000 genomes]
rs8177568	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77739600-77775600	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr14:77740200-77766800	Strong transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:77740200-77769800	Weak transcription	Small Intestine	intestine
4	chr14:77740400-77766000	Weak transcription	Stomach Mucosa	stomach
5	chr14:77740800-77766200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr14:77741000-77767400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr14:77741800-77773600	Weak transcription	GM12878-XiMat	blood
8	chr14:77742000-77766600	Strong transcription	Placenta	Placenta
9	chr14:77742200-77767600	Strong transcription	Stomach Smooth Muscle	stomach
10	chr14:77742400-77766400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr14:77742400-77766400	Strong transcription	Adipose Nuclei	Adipose
12	chr14:77742400-77780200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr14:77742600-77766600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr14:77743200-77760400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr14:77744000-77771400	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr14:77746600-77767200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr14:77746800-77762200	Weak transcription	Colonic Mucosa	Colon
18	chr14:77747200-77762000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:77749200-77766400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr14:77749400-77763000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr14:77750000-77762000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr14:77750200-77767400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr14:77750800-77768000	Weak transcription	K562	blood
24	chr14:77751200-77764600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr14:77751400-77762600	Weak transcription	Hela-S3	cervix
26	chr14:77751400-77769200	Weak transcription	NHLF	lung
27	chr14:77751400-77769800	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr14:77751400-77775600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr14:77751400-77786200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr14:77751800-77762200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr14:77751800-77767600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr14:77751800-77775600	Weak transcription	Thymus	Thymus
33	chr14:77752000-77761200	Weak transcription	Esophagus	oesophagus
34	chr14:77752000-77762200	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr14:77752200-77762000	Weak transcription	Pancreas	Pancrea
36	chr14:77752200-77775600	Weak transcription	Fetal Thymus	thymus
37	chr14:77752400-77761200	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr14:77752600-77762000	Weak transcription	HSMM	muscle
39	chr14:77752600-77773000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr14:77752600-77779200	Weak transcription	Fetal Heart	heart
41	chr14:77753000-77762200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr14:77753000-77764000	Weak transcription	Primary B cells from peripheral blood	blood
43	chr14:77753200-77762000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr14:77753200-77762200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr14:77753200-77762200	Weak transcription	Fetal Brain Female	brain
46	chr14:77753400-77761400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr14:77753400-77762200	Weak transcription	HepG2	liver
48	chr14:77753600-77762000	Weak transcription	Right Ventricle	heart
49	chr14:77753600-77762000	Weak transcription	HMEC	breast
50	chr14:77753600-77762200	Weak transcription	Monocytes-CD14+_RO01746	blood

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