Variant report

Variant	rs72681261
Chromosome Location	chr14:77809055-77809056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:77802289..77805136-chr14:77808966..77810650,2	K562	blood:
2	chr14:77808718..77810502-chr14:77813524..77815193,2	K562	blood:
3	chr14:77808493..77810636-chr14:77812936..77815914,3	K562	blood:
4	chr14:77802533..77804704-chr14:77806659..77809069,2	MCF-7	breast:
5	chr14:77803636..77806540-chr14:77808690..77810650,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10450933	0.91[ASN][1000 genomes]
rs17105674	0.82[EUR][1000 genomes]
rs17105759	0.91[ASN][1000 genomes]
rs17751122	0.91[ASN][1000 genomes]
rs2287397	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2293802	0.91[ASN][1000 genomes]
rs2302831	0.82[EUR][1000 genomes]
rs3742739	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55886156	0.82[EUR][1000 genomes]
rs55891221	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56018212	0.82[EUR][1000 genomes]
rs56091500	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56403921	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681225	0.82[EUR][1000 genomes]
rs72681227	0.82[EUR][1000 genomes]
rs72681229	0.82[EUR][1000 genomes]
rs72681235	0.82[EUR][1000 genomes]
rs72681243	0.89[EUR][1000 genomes]
rs72681262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681263	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72681264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681265	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681270	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681278	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681279	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681280	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681281	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681283	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681284	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73311381	1.00[ASN][1000 genomes]
rs8177546	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8177560	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8177565	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8177567	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8177568	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8177571	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv902107	chr14:77790416-77871777	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77789200-77818200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr14:77793200-77824600	Weak transcription	Psoas Muscle	Psoas
3	chr14:77801200-77810400	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr14:77801200-77812600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:77801400-77810200	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr14:77801400-77811200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr14:77801600-77810600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr14:77802000-77813000	Strong transcription	Primary B cells from peripheral blood	blood
9	chr14:77802800-77810600	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr14:77803000-77811000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr14:77803000-77811000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:77803200-77810400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr14:77803600-77813000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr14:77803800-77835400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr14:77804200-77809400	Weak transcription	Hela-S3	cervix
16	chr14:77804200-77811400	Strong transcription	Primary B cells from cord blood	blood
17	chr14:77804400-77809600	Strong transcription	Brain Anterior Caudate	brain
18	chr14:77804400-77811400	Strong transcription	Primary hematopoietic stem cells	blood
19	chr14:77804600-77810800	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr14:77804600-77811000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr14:77804800-77810200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr14:77804800-77811400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr14:77805000-77809200	Weak transcription	Fetal Brain Male	brain
24	chr14:77805200-77810000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr14:77805200-77813000	Strong transcription	Fetal Intestine Large	intestine
26	chr14:77805200-77818600	Weak transcription	Small Intestine	intestine
27	chr14:77805400-77810800	Strong transcription	GM12878-XiMat	blood
28	chr14:77805400-77811000	Strong transcription	Primary T cells from cord blood	blood
29	chr14:77805400-77811200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr14:77805400-77812800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr14:77805600-77809200	Weak transcription	HUVEC	blood vessel
32	chr14:77805600-77809800	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr14:77805600-77810800	Strong transcription	Left Ventricle	heart
34	chr14:77805600-77811000	Strong transcription	Brain Inferior Temporal Lobe	brain
35	chr14:77805600-77811000	Strong transcription	Pancreas	Pancrea
36	chr14:77805800-77810000	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr14:77805800-77810000	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr14:77805800-77810800	Strong transcription	Fetal Stomach	stomach
39	chr14:77805800-77811000	Strong transcription	Fetal Thymus	thymus
40	chr14:77805800-77811200	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr14:77805800-77813200	Strong transcription	Stomach Smooth Muscle	stomach
42	chr14:77806000-77809800	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr14:77806000-77810000	Strong transcription	Adipose Nuclei	Adipose
44	chr14:77806000-77810200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr14:77806000-77810200	Strong transcription	Ovary	ovary
46	chr14:77806000-77810600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr14:77806000-77810600	Strong transcription	Duodenum Mucosa	Duodenum
48	chr14:77806000-77810600	Strong transcription	Fetal Muscle Trunk	muscle
49	chr14:77806000-77811000	Strong transcription	Dnd41	blood
50	chr14:77806000-77811200	Strong transcription	Liver	Liver

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