Variant report
| Variant | rs72682805 |
|---|---|
| Chromosome Location | chr4:120691452-120691453 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:120687235..120689580-chr4:120690660..120692229,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10004865 | 0.87[ASN][1000 genomes] |
| rs11098535 | 1.00[AFR][1000 genomes] |
| rs56085109 | 1.00[AFR][1000 genomes] |
| rs72678594 | 1.00[AFR][1000 genomes] |
| rs72680949 | 1.00[AFR][1000 genomes] |
| rs72680951 | 1.00[AFR][1000 genomes] |
| rs72680964 | 1.00[AFR][1000 genomes] |
| rs72680967 | 1.00[AFR][1000 genomes] |
| rs72680968 | 1.00[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs72680969 | 1.00[AFR][1000 genomes] |
| rs72680972 | 0.87[ASN][1000 genomes] |
| rs72680973 | 1.00[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs72680974 | 1.00[AFR][1000 genomes] |
| rs72680975 | 0.87[ASN][1000 genomes] |
| rs72680976 | 1.00[AFR][1000 genomes] |
| rs72680978 | 1.00[AFR][1000 genomes] |
| rs72680980 | 1.00[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs72680982 | 1.00[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs72680985 | 1.00[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs72680987 | 1.00[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72680989 | 1.00[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72680990 | 1.00[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72680995 | 1.00[AFR][1000 genomes] |
| rs72681002 | 1.00[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72682804 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916641 | chr4:119780023-120777320 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 72 gene(s) | inside rSNPs | diseases |
| 2 | nsv532739 | chr4:120392824-121098103 | Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
| 3 | nsv1006572 | chr4:120432494-120694243 | Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv966541 | chr4:120671470-120702965 | Enhancers Weak transcription Bivalent Enhancer Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:120690200-120695000 | Weak transcription | Fetal Heart | heart |
