Variant report

Variant	rs72700645
Chromosome Location	chr9:15239821-15239822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15238862..15241119-chr9:15243843..15246423,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs41265312	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031340	chr9:15163004-15332769	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv521191	chr9:15218947-15246652	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15193400-15249600	Weak transcription	Colonic Mucosa	Colon
2	chr9:15221200-15242200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:15221800-15242800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:15223400-15258200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr9:15224400-15242800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:15224600-15243600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:15224600-15244400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr9:15229800-15240000	Weak transcription	Aorta	Aorta
9	chr9:15229800-15243000	Weak transcription	Gastric	stomach
10	chr9:15229800-15243000	Weak transcription	Ovary	ovary
11	chr9:15232000-15244400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:15232600-15246400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr9:15233600-15243400	Weak transcription	Fetal Stomach	stomach
14	chr9:15235200-15240200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:15235200-15240200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr9:15238200-15240800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr9:15238400-15275400	Weak transcription	Fetal Intestine Large	intestine
18	chr9:15238800-15240800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr9:15238800-15243600	Weak transcription	Colon Smooth Muscle	Colon
20	chr9:15239000-15242400	Weak transcription	Fetal Intestine Small	intestine
21	chr9:15239000-15244200	Weak transcription	Esophagus	oesophagus
22	chr9:15239000-15247000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr9:15239400-15243600	Weak transcription	Pancreas	Pancrea
24	chr9:15239600-15240000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr9:15239600-15240200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
26	chr9:15239600-15240600	Enhancers	Adipose Nuclei	Adipose
27	chr9:15239600-15241000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:15239600-15241000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr9:15239600-15241200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr9:15239800-15240400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
31	chr9:15239800-15240800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr9:15239800-15241000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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