Variant report

Variant	rs72706143
Chromosome Location	chr1:155733358-155733359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:155729870..155731926-chr1:155731964..155733488,2	MCF-7	breast:
2	chr1:155618049..155618574-chr1:155733303..155733817,4	MCF-7	breast:
3	chr1:155733230..155735390-chr1:155735568..155737501,2	K562	blood:
4	chr1:155733230..155735390-chr1:155735568..155738519,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
2	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
3	nsv428246	chr1:155558197-155785831	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	esv3436971	chr1:155618172-155733386	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	esv3338099	chr1:155618190-155733359	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	esv3423892	chr1:155664084-155901487	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv946423	chr1:155732243-155737328	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155715400-155739200	Weak transcription	Fetal Heart	heart
2	chr1:155715400-155789200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:155715600-155764600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:155716000-155793400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:155716600-155781800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:155717200-155761000	Strong transcription	Fetal Stomach	stomach
7	chr1:155717400-155733400	Strong transcription	Brain Anterior Caudate	brain
8	chr1:155717400-155795800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:155717600-155733800	Strong transcription	Spleen	Spleen
10	chr1:155717600-155750200	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr1:155720200-155733800	Strong transcription	Sigmoid Colon	Sigmoid Colon
12	chr1:155720200-155745400	Strong transcription	Fetal Muscle Leg	muscle
13	chr1:155720200-155748600	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr1:155720200-155748800	Strong transcription	Duodenum Mucosa	Duodenum
15	chr1:155720200-155748800	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr1:155720200-155749000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr1:155720200-155749600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr1:155720200-155750200	Strong transcription	Primary T cells from cord blood	blood
19	chr1:155720200-155750600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr1:155720200-155755800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr1:155720200-155756200	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr1:155720200-155756600	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr1:155720200-155798200	Strong transcription	Fetal Thymus	thymus
24	chr1:155720200-155803600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr1:155720400-155733800	Strong transcription	Left Ventricle	heart
26	chr1:155720400-155743200	Strong transcription	Stomach Smooth Muscle	stomach
27	chr1:155720400-155743200	Strong transcription	Thymus	Thymus
28	chr1:155720400-155750200	Strong transcription	Adipose Nuclei	Adipose
29	chr1:155720400-155750400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr1:155720400-155750600	Strong transcription	Dnd41	blood
31	chr1:155720400-155755600	Strong transcription	Placenta	Placenta
32	chr1:155720400-155756400	Strong transcription	Liver	Liver
33	chr1:155720400-155760800	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr1:155720400-155796800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr1:155720600-155733400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr1:155720600-155733400	Strong transcription	Brain Germinal Matrix	brain
37	chr1:155720600-155733400	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr1:155720600-155733600	Strong transcription	Skeletal Muscle Male	skeletal muscle
39	chr1:155720600-155733800	Strong transcription	Fetal Lung	lung
40	chr1:155720600-155735800	Strong transcription	Rectal Smooth Muscle	rectum
41	chr1:155720600-155743200	Strong transcription	Fetal Brain Female	brain
42	chr1:155720600-155743600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr1:155720600-155757200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr1:155720800-155733400	Strong transcription	Right Ventricle	heart
45	chr1:155720800-155737200	Strong transcription	H1 Cell Line	embryonic stem cell
46	chr1:155720800-155741800	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr1:155720800-155742800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr1:155720800-155743000	Strong transcription	H9 Cell Line	embryonic stem cell
49	chr1:155720800-155747600	Strong transcription	Fetal Muscle Trunk	muscle
50	chr1:155720800-155749000	Strong transcription	HUES64 Cell Line	embryonic stem cell

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