Variant report

Variant	rs72709163
Chromosome Location	chr9:72595510-72595511
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs3015233	1.00[AFR][1000 genomes]
rs72709171	1.00[AFR][1000 genomes]
rs72725252	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1035668	chr9:72555053-72632796	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1051004	chr9:72557761-72632015	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72587000-72596800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr9:72591200-72598200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:72591400-72596600	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:72591600-72596400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:72591800-72596200	Weak transcription	Osteobl	bone
6	chr9:72592200-72595600	Weak transcription	HSMM	muscle
7	chr9:72592200-72595800	Weak transcription	HSMMtube	muscle
8	chr9:72592200-72596200	Weak transcription	HMEC	breast
9	chr9:72592200-72596400	Weak transcription	HUVEC	blood vessel
10	chr9:72592200-72596600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:72592200-72596600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:72592200-72596600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:72592400-72596000	Weak transcription	NH-A	brain
14	chr9:72592600-72595800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr9:72593200-72596600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr9:72594400-72597400	Enhancers	NHLF	lung
17	chr9:72594600-72597000	Enhancers	Ovary	ovary
18	chr9:72594800-72596400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:72595200-72595600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:72595400-72595800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:72595400-72597200	Enhancers	NHDF-Ad	bronchial

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