Variant report

Variant	rs72717199
Chromosome Location	chr9:72143580-72143581
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11139414	0.85[EUR][1000 genomes]
rs11999656	0.83[EUR][1000 genomes]
rs12000827	0.85[EUR][1000 genomes]
rs12000908	0.85[EUR][1000 genomes]
rs12001157	0.82[AFR][1000 genomes]
rs12006272	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12552474	0.85[EUR][1000 genomes]
rs12553894	0.85[EUR][1000 genomes]
rs12553941	0.83[EUR][1000 genomes]
rs12554978	0.85[EUR][1000 genomes]
rs12555100	0.85[EUR][1000 genomes]
rs12555572	0.86[AFR][1000 genomes]
rs1334309	0.84[AFR][1000 genomes]
rs1411439	0.83[EUR][1000 genomes]
rs1411441	0.83[EUR][1000 genomes]
rs1411442	0.83[EUR][1000 genomes]
rs4636268	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56654380	0.83[EUR][1000 genomes]
rs57512468	0.85[EUR][1000 genomes]
rs58638129	0.85[EUR][1000 genomes]
rs58667541	0.83[EUR][1000 genomes]
rs58898534	0.85[EUR][1000 genomes]
rs59791186	0.83[EUR][1000 genomes]
rs60759202	0.83[EUR][1000 genomes]
rs7036538	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72719005	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72719017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72719024	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73647250	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73647252	0.85[EUR][1000 genomes]
rs73647254	0.85[EUR][1000 genomes]
rs73647255	0.85[EUR][1000 genomes]
rs73647256	0.85[EUR][1000 genomes]
rs73647257	0.85[EUR][1000 genomes]
rs73647259	0.83[EUR][1000 genomes]
rs73647260	0.83[EUR][1000 genomes]
rs7849601	0.83[EUR][1000 genomes]
rs7861451	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7862458	0.89[AFR][1000 genomes]
rs7871753	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1047593	chr9:71971536-72180583	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1035633	chr9:71995963-72176984	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1048650	chr9:72028458-72179847	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1039966	chr9:72057304-72181564	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv893435	chr9:72091413-72147700	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv614574	chr9:72100051-72152776	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv466413	chr9:72100051-72160174	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv614575	chr9:72100051-72160174	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72132200-72163000	Weak transcription	Aorta	Aorta
2	chr9:72141800-72158200	Weak transcription	Ovary	ovary
3	chr9:72142200-72143600	Enhancers	Liver	Liver

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