Variant report

Variant	rs72717312
Chromosome Location	chr4:143892919-143892920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10003726	0.88[ASN][1000 genomes]
rs10026166	0.89[ASN][1000 genomes]
rs10032057	0.88[ASN][1000 genomes]
rs10032156	0.88[ASN][1000 genomes]
rs10519675	0.89[ASN][1000 genomes]
rs11932563	0.89[ASN][1000 genomes]
rs11936427	0.89[ASN][1000 genomes]
rs11936467	0.89[ASN][1000 genomes]
rs11938835	0.89[ASN][1000 genomes]
rs11943509	0.89[ASN][1000 genomes]
rs11947590	0.83[ASN][1000 genomes]
rs13101590	0.89[ASN][1000 genomes]
rs13101986	0.89[ASN][1000 genomes]
rs13128465	0.89[ASN][1000 genomes]
rs13139051	0.89[ASN][1000 genomes]
rs13139834	0.89[ASN][1000 genomes]
rs13140271	0.89[ASN][1000 genomes]
rs13147901	0.88[ASN][1000 genomes]
rs1510134	0.88[ASN][1000 genomes]
rs1510136	0.81[ASN][1000 genomes]
rs1510137	0.81[ASN][1000 genomes]
rs1605953	0.89[ASN][1000 genomes]
rs17017081	0.88[ASN][1000 genomes]
rs17678304	0.89[ASN][1000 genomes]
rs1912393	0.88[ASN][1000 genomes]
rs28460827	0.89[ASN][1000 genomes]
rs28493626	0.88[ASN][1000 genomes]
rs28497592	0.88[ASN][1000 genomes]
rs28577925	0.86[ASN][1000 genomes]
rs28625957	0.89[ASN][1000 genomes]
rs28850637	0.89[ASN][1000 genomes]
rs35668471	0.89[ASN][1000 genomes]
rs4690710	0.83[EUR][1000 genomes]
rs4690711	0.88[ASN][1000 genomes]
rs66682110	0.88[ASN][1000 genomes]
rs6815888	0.89[ASN][1000 genomes]
rs6820975	0.89[ASN][1000 genomes]
rs6822869	0.87[ASN][1000 genomes]
rs6827913	0.86[ASN][1000 genomes]
rs6837806	0.89[ASN][1000 genomes]
rs6845018	0.89[ASN][1000 genomes]
rs7656332	0.89[ASN][1000 genomes]
rs7666854	0.89[ASN][1000 genomes]
rs7668378	0.89[ASN][1000 genomes]
rs7668605	0.89[ASN][1000 genomes]
rs7673332	0.88[ASN][1000 genomes]
rs7692119	0.89[ASN][1000 genomes]
rs7692881	0.89[ASN][1000 genomes]
rs7696326	0.81[ASN][1000 genomes]
rs9308162	0.88[ASN][1000 genomes]
rs9999108	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830102	chr4:143820268-143953611	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033285	chr4:143884298-144010784	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
3	nsv537288	chr4:143884298-144010784	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143889800-143894200	Weak transcription	Colon Smooth Muscle	Colon

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