Variant report

Variant	rs72719029
Chromosome Location	chr9:72183218-72183219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10780527	0.98[ASN][1000 genomes]
rs10780528	0.98[ASN][1000 genomes]
rs10867825	0.91[ASN][1000 genomes]
rs11139338	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11139361	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1330334	0.91[ASN][1000 genomes]
rs1556211	0.94[ASN][1000 genomes]
rs1854702	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1854703	0.91[ASN][1000 genomes]
rs1967880	0.98[ASN][1000 genomes]
rs1970017	0.98[ASN][1000 genomes]
rs3927538	0.82[ASN][1000 genomes]
rs4744913	0.98[ASN][1000 genomes]
rs4744914	0.96[ASN][1000 genomes]
rs4744917	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4744918	0.91[ASN][1000 genomes]
rs4744919	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6559643	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7030393	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7350265	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7850006	0.89[ASN][1000 genomes]
rs7853783	0.98[ASN][1000 genomes]
rs7864173	0.91[ASN][1000 genomes]
rs7871895	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1049390	chr9:72168645-72185751	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72163200-72185600	Weak transcription	Aorta	Aorta
2	chr9:72170200-72184200	Weak transcription	Ovary	ovary
3	chr9:72173800-72188400	Weak transcription	Fetal Lung	lung
4	chr9:72179800-72184000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:72180000-72183600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:72180200-72183800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr9:72180400-72183800	Weak transcription	Adipose Nuclei	Adipose
8	chr9:72180400-72183800	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:72180400-72185000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr9:72180400-72208400	Weak transcription	Gastric	stomach
11	chr9:72180600-72184200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr9:72180800-72183800	Weak transcription	Fetal Brain Female	brain
13	chr9:72181000-72184000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:72181000-72184200	Weak transcription	Right Ventricle	heart
15	chr9:72181000-72195000	Weak transcription	Left Ventricle	heart
16	chr9:72181200-72184600	Weak transcription	Brain Hippocampus Middle	brain
17	chr9:72181200-72188400	Weak transcription	Liver	Liver
18	chr9:72181400-72183800	Weak transcription	Fetal Heart	heart
19	chr9:72181400-72193000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr9:72181600-72185000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr9:72181800-72184000	Weak transcription	Fetal Brain Male	brain
22	chr9:72181800-72184600	Weak transcription	Brain Germinal Matrix	brain
23	chr9:72181800-72185000	Weak transcription	Brain Anterior Caudate	brain
24	chr9:72181800-72188000	Weak transcription	Fetal Muscle Trunk	muscle

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