Variant report

Variant	rs72722641
Chromosome Location	chr1:85697220-85697221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11161556	0.99[ASN][1000 genomes]
rs11161574	0.81[ASN][1000 genomes]
rs11577656	0.97[ASN][1000 genomes]
rs11583836	0.99[ASN][1000 genomes]
rs12563295	0.97[ASN][1000 genomes]
rs17123650	0.99[ASN][1000 genomes]
rs36006436	0.97[ASN][1000 genomes]
rs4949892	0.98[ASN][1000 genomes]
rs4949926	0.83[ASN][1000 genomes]
rs60156243	0.98[ASN][1000 genomes]
rs6663690	0.97[ASN][1000 genomes]
rs6671589	0.98[ASN][1000 genomes]
rs709790	0.81[ASN][1000 genomes]
rs72722616	0.85[ASN][1000 genomes]
rs72722624	0.96[ASN][1000 genomes]
rs72722631	0.97[ASN][1000 genomes]
rs72722638	0.99[ASN][1000 genomes]
rs72722643	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv34165	chr1:85542040-85846249	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv830459	chr1:85589585-85786311	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85687000-85709600	Weak transcription	Aorta	Aorta
2	chr1:85692000-85697400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:85692200-85697400	Weak transcription	NHEK	skin
4	chr1:85696400-85705600	Weak transcription	Fetal Heart	heart
5	chr1:85697000-85698000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links