Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr4:142055880-142056030	BJ	skin:	n/a	n/a
2	CTCF	chr4:142055840-142055990	AG04449	skin:	n/a	n/a
3	CTCF	chr4:142055786-142056006	GM12878	blood:	n/a	n/a
4	CTCF	chr4:142055860-142056010	SK-N-SH_RA	brain:	n/a	n/a
5	CTCF	chr4:142055900-142056050	GM12869	blood:	n/a	n/a
6	CTCF	chr4:142055880-142056030	AG09319	gingival:	n/a	n/a
7	CTCF	chr4:142055860-142056010	MCF-7	breast:	n/a	n/a
8	CTCF	chr4:142055840-142055990	AG09319	gingival:	n/a	n/a
9	CTCF	chr4:142055840-142055990	HEEpiC	esophagus:	n/a	n/a
10	CTCF	chr4:142055860-142056010	RPTEC	kidney:	n/a	n/a
11	CTCF	chr4:142055880-142056030	WERI-Rb-1	eye:	n/a	n/a
12	SMC3	chr4:142050846-142056262	SK-N-SH	brain:	n/a	chr4:142052640-142052648 chr4:142053459-142053469
13	CTCF	chr4:142055860-142056010	HFF	foreskin:	n/a	n/a
14	CTCF	chr4:142055880-142056030	HAc	cerebellar:	n/a	n/a
15	CTCF	chr4:142055880-142056030	AG09309	skin:	n/a	n/a

Variant related genes	Relation type
RNF150	TF binding region

rSNPs within LD-proxies of this variant (count:19)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv880170	chr4:142046828-142137165	Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv526770	chr4:142048547-142061946	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142054800-142056200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:142055000-142056000	Enhancers	Colon Smooth Muscle	Colon
3	chr4:142055000-142056000	Enhancers	Rectal Smooth Muscle	rectum
4	chr4:142055000-142056600	Enhancers	Fetal Stomach	stomach
5	chr4:142055000-142056800	Enhancers	Fetal Muscle Leg	muscle
6	chr4:142055200-142056000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr4:142055200-142056000	Enhancers	Brain Hippocampus Middle	brain
8	chr4:142055200-142056000	Enhancers	Fetal Thymus	thymus
9	chr4:142055200-142056200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr4:142055200-142056200	Enhancers	Brain Angular Gyrus	brain
11	chr4:142055200-142056800	Enhancers	Fetal Heart	heart
12	chr4:142055200-142057200	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr4:142055400-142056000	Enhancers	Brain Cingulate Gyrus	brain
14	chr4:142055600-142056000	Enhancers	Brain Anterior Caudate	brain
15	chr4:142055600-142056400	Enhancers	Primary hematopoietic stem cells	blood
16	chr4:142055800-142056000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr4:142055800-142056200	Enhancers	Brain Germinal Matrix	brain
18	chr4:142055800-142056200	Enhancers	Brain Substantia Nigra	brain
19	chr4:142055800-142056200	Enhancers	Stomach Smooth Muscle	stomach
20	chr4:142055800-142056600	Enhancers	Left Ventricle	heart

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