Variant report

Variant	rs72725773
Chromosome Location	chr14:70287082-70287083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70232960..70234581-chr14:70285525..70287129,2	K562	blood:
2	chr14:70286691..70287321-chr14:70494272..70494975,2	MCF-7	breast:
3	chr14:70285653..70287364-chr14:70317276..70318842,2	MCF-7	breast:
4	chr14:70285591..70287548-chr14:70492500..70494063,2	K562	blood:

Variant related genes	Relation type
ENSG00000100650	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10130926	0.81[EUR][1000 genomes]
rs10136397	0.84[EUR][1000 genomes]
rs10146537	0.83[EUR][1000 genomes]
rs10148404	0.84[EUR][1000 genomes]
rs11620808	0.84[EUR][1000 genomes]
rs11621916	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11622925	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11623262	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11624301	0.88[ASN][1000 genomes]
rs11624532	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11626145	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11627012	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11627089	0.84[EUR][1000 genomes]
rs11628423	0.87[EUR][1000 genomes]
rs11628546	0.87[EUR][1000 genomes]
rs11628665	0.84[EUR][1000 genomes]
rs13313365	0.84[EUR][1000 genomes]
rs13313366	0.84[EUR][1000 genomes]
rs14411	0.84[EUR][1000 genomes]
rs2148500	0.88[ASN][1000 genomes]
rs28437671	0.84[EUR][1000 genomes]
rs28437822	0.82[EUR][1000 genomes]
rs28480224	0.80[EUR][1000 genomes]
rs28785205	0.87[EUR][1000 genomes]
rs4646285	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55724465	0.82[EUR][1000 genomes]
rs56177148	0.84[EUR][1000 genomes]
rs58582364	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59066042	0.84[EUR][1000 genomes]
rs61356864	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61408837	0.82[AMR][1000 genomes]
rs72725740	0.82[EUR][1000 genomes]
rs72725743	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72725745	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72725776	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72725780	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72725792	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72725793	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72725794	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72725798	0.88[ASN][1000 genomes]
rs943273	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70282400-70287800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:70284200-70288200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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