Variant report

Variant	rs72725801
Chromosome Location	chr14:70320343-70320344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11628031	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11628994	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2148500	0.87[EUR][1000 genomes]
rs56176047	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56387453	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725792	0.81[EUR][1000 genomes]
rs72725793	0.81[EUR][1000 genomes]
rs72725794	0.81[EUR][1000 genomes]
rs72725798	0.89[EUR][1000 genomes]
rs72725799	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs943273	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70316600-70321800	Weak transcription	Hela-S3	cervix
2	chr14:70317200-70325600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:70318000-70323200	Enhancers	HepG2	liver
4	chr14:70318200-70320800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:70319000-70321000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:70319200-70323200	Enhancers	Brain Germinal Matrix	brain
7	chr14:70319400-70320400	Enhancers	Dnd41	blood
8	chr14:70319400-70320800	Enhancers	Fetal Thymus	thymus
9	chr14:70320000-70320400	Weak transcription	Fetal Brain Male	brain
10	chr14:70320000-70320800	Enhancers	Fetal Muscle Leg	muscle
11	chr14:70320200-70320600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr14:70320200-70320800	Enhancers	Placenta	Placenta
13	chr14:70320200-70325400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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