Variant report

Variant	rs72729895
Chromosome Location	chr14:70575338-70575339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10143453	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56157852	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61649977	0.83[AMR][1000 genomes]
rs61662721	0.83[AMR][1000 genomes]
rs8022221	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70565800-70578400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr14:70565800-70578800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr14:70566000-70578600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:70567600-70580800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr14:70567800-70582200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:70574000-70575800	Enhancers	Brain Cingulate Gyrus	brain
7	chr14:70574400-70575800	Enhancers	Brain Angular Gyrus	brain
8	chr14:70574600-70575600	Enhancers	Brain Hippocampus Middle	brain
9	chr14:70574800-70575600	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr14:70574800-70575600	Enhancers	Fetal Brain Male	brain
11	chr14:70575200-70575600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr14:70575200-70575600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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