Variant report

Variant	rs72734159
Chromosome Location	chr1:195697623-195697624
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10801449	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10921892	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10921902	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11587693	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11587700	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11802328	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12074167	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12083340	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12083881	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1576764	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17626633	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17626902	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17672688	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17673134	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2895785	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2942924	0.86[ASN][1000 genomes]
rs2989971	0.86[ASN][1000 genomes]
rs3010156	0.84[ASN][1000 genomes]
rs4304556	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4514223	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55707019	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55894754	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56012771	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56024053	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56067913	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72734142	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72734144	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72734150	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72734151	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72734153	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72734155	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72734156	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72734157	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72734164	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72734165	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72734166	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72734169	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72734170	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7415128	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872894	chr1:195053221-195745968	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1009307	chr1:195368381-195726703	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv872932	chr1:195447286-195736070	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv872937	chr1:195493538-195849028	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1007203	chr1:195672857-195902360	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195693400-195699200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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