Variant report

Variant	rs72735359
Chromosome Location	chr1:215305373-215305374
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214975717..214977298-chr1:215304558..215307243,2	MCF-7	breast:

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10127521	0.98[ASN][1000 genomes]
rs10127656	0.84[ASN][1000 genomes]
rs10746455	0.95[ASN][1000 genomes]
rs10779639	0.81[ASN][1000 genomes]
rs10779640	0.84[ASN][1000 genomes]
rs10779642	1.00[ASN][1000 genomes]
rs10779643	1.00[ASN][1000 genomes]
rs10779644	0.84[ASN][1000 genomes]
rs10779645	0.84[ASN][1000 genomes]
rs10779646	0.84[ASN][1000 genomes]
rs10779647	0.84[ASN][1000 genomes]
rs10779649	0.99[ASN][1000 genomes]
rs10779650	0.97[ASN][1000 genomes]
rs10779651	0.97[ASN][1000 genomes]
rs10779652	0.89[ASN][1000 genomes]
rs10864154	0.84[ASN][1000 genomes]
rs10864157	0.86[ASN][1000 genomes]
rs11120495	0.97[ASN][1000 genomes]
rs11120496	0.82[ASN][1000 genomes]
rs11120497	0.93[ASN][1000 genomes]
rs11120498	0.82[ASN][1000 genomes]
rs11120499	0.81[ASN][1000 genomes]
rs11120500	0.98[ASN][1000 genomes]
rs11120506	0.84[ASN][1000 genomes]
rs11120508	0.84[ASN][1000 genomes]
rs11120511	0.84[ASN][1000 genomes]
rs11120513	0.84[ASN][1000 genomes]
rs11120516	0.83[ASN][1000 genomes]
rs1112101	0.93[ASN][1000 genomes]
rs12031308	0.84[ASN][1000 genomes]
rs12061916	0.82[ASN][1000 genomes]
rs12062098	0.91[ASN][1000 genomes]
rs12068734	0.84[ASN][1000 genomes]
rs12120091	0.86[ASN][1000 genomes]
rs12121761	0.81[ASN][1000 genomes]
rs12135076	0.99[ASN][1000 genomes]
rs12138497	0.97[ASN][1000 genomes]
rs12141874	0.98[ASN][1000 genomes]
rs12143339	0.84[ASN][1000 genomes]
rs12410041	0.98[ASN][1000 genomes]
rs12411068	0.97[ASN][1000 genomes]
rs12567520	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12742137	0.84[ASN][1000 genomes]
rs1361340	0.98[ASN][1000 genomes]
rs1416647	0.93[ASN][1000 genomes]
rs1578137	0.93[ASN][1000 genomes]
rs2363554	0.84[ASN][1000 genomes]
rs2363556	0.99[ASN][1000 genomes]
rs2363557	1.00[ASN][1000 genomes]
rs2363565	0.84[ASN][1000 genomes]
rs2363566	0.98[ASN][1000 genomes]
rs2363567	0.98[ASN][1000 genomes]
rs2885812	0.84[ASN][1000 genomes]
rs2885813	1.00[ASN][1000 genomes]
rs2885815	0.83[ASN][1000 genomes]
rs3931584	0.83[ASN][1000 genomes]
rs3931585	0.86[ASN][1000 genomes]
rs4269745	0.99[ASN][1000 genomes]
rs4300189	0.98[ASN][1000 genomes]
rs4303048	1.00[ASN][1000 genomes]
rs4411107	0.82[ASN][1000 genomes]
rs4428856	0.82[ASN][1000 genomes]
rs4497183	0.84[ASN][1000 genomes]
rs4509552	0.84[ASN][1000 genomes]
rs4509553	0.86[ASN][1000 genomes]
rs4531266	0.84[ASN][1000 genomes]
rs4548407	0.88[ASN][1000 genomes]
rs4571941	0.81[ASN][1000 genomes]
rs4573492	0.82[ASN][1000 genomes]
rs4607848	0.98[ASN][1000 genomes]
rs4655276	0.84[ASN][1000 genomes]
rs4655277	0.97[ASN][1000 genomes]
rs4655278	0.98[ASN][1000 genomes]
rs4655391	0.84[ASN][1000 genomes]
rs4655392	0.84[ASN][1000 genomes]
rs4655393	0.99[ASN][1000 genomes]
rs4655394	0.97[ASN][1000 genomes]
rs4655395	0.98[ASN][1000 genomes]
rs61818320	0.98[ASN][1000 genomes]
rs61818328	1.00[ASN][1000 genomes]
rs6657313	0.98[ASN][1000 genomes]
rs6662353	0.98[ASN][1000 genomes]
rs6666828	0.82[ASN][1000 genomes]
rs6672978	0.83[ASN][1000 genomes]
rs6673739	0.97[ASN][1000 genomes]
rs6675926	1.00[ASN][1000 genomes]
rs6678758	1.00[ASN][1000 genomes]
rs6683041	0.82[ASN][1000 genomes]
rs6684084	0.97[ASN][1000 genomes]
rs6695343	0.89[ASN][1000 genomes]
rs6695967	1.00[ASN][1000 genomes]
rs6696333	0.98[ASN][1000 genomes]
rs72735327	0.82[AMR][1000 genomes]
rs72735329	0.82[AMR][1000 genomes]
rs72735337	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7417100	0.84[ASN][1000 genomes]
rs7513709	0.84[ASN][1000 genomes]
rs7540029	0.88[ASN][1000 genomes]
rs7541543	0.84[ASN][1000 genomes]
rs7547572	0.97[ASN][1000 genomes]
rs7549136	0.82[ASN][1000 genomes]
rs7551415	0.82[ASN][1000 genomes]
rs9793382	0.88[ASN][1000 genomes]
rs9793690	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
2	esv3429043	chr1:215303479-215306027	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215288800-215306600	Weak transcription	NHLF	lung
2	chr1:215303000-215305600	Weak transcription	NHDF-Ad	bronchial
3	chr1:215303400-215305400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:215303600-215305400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:215305000-215305800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:215305200-215306000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:215305200-215306000	Enhancers	Osteobl	bone

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