Variant report

Variant	rs72736141
Chromosome Location	chr1:195728273-195728274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KCNT2-2	chr1:195727481-195728588	NONHSAT008590

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10494729	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10921905	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11807635	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11807832	0.85[EUR][1000 genomes]
rs11810167	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12029946	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12030394	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12030830	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12037920	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12038958	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12042500	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12042815	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12045875	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12046609	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12048401	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12073625	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12073662	0.93[EUR][1000 genomes]
rs2104875	0.88[EUR][1000 genomes]
rs60298660	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66471251	0.93[EUR][1000 genomes]
rs72734141	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72734147	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72734167	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72736123	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72736142	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs876716	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872894	chr1:195053221-195745968	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv872932	chr1:195447286-195736070	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv872937	chr1:195493538-195849028	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1007203	chr1:195672857-195902360	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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