Variant report
| Variant | rs72736142 |
|---|---|
| Chromosome Location | chr1:195728453-195728454 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:195728301..195731398-chr1:195733712..195736941,3 | MCF-7 | breast: |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-KCNT2-2 | chr1:195727481-195728588 | NONHSAT008590 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10494729 | 0.83[EUR][1000 genomes] |
| rs10921905 | 0.84[EUR][1000 genomes] |
| rs11807635 | 0.84[EUR][1000 genomes] |
| rs11810167 | 0.86[EUR][1000 genomes] |
| rs12029946 | 0.83[EUR][1000 genomes] |
| rs12030394 | 0.85[EUR][1000 genomes] |
| rs12037920 | 0.84[EUR][1000 genomes] |
| rs12038958 | 0.82[EUR][1000 genomes] |
| rs12042500 | 0.84[EUR][1000 genomes] |
| rs12042815 | 0.86[EUR][1000 genomes] |
| rs12045875 | 0.84[EUR][1000 genomes] |
| rs12046609 | 0.83[EUR][1000 genomes] |
| rs12048401 | 0.86[EUR][1000 genomes] |
| rs12071433 | 0.86[AFR][1000 genomes] |
| rs12073625 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12073662 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12085765 | 0.81[ASN][1000 genomes] |
| rs2104875 | 0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs60298660 | 0.88[EUR][1000 genomes] |
| rs66471251 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72734141 | 0.83[EUR][1000 genomes] |
| rs72734147 | 0.81[EUR][1000 genomes] |
| rs72734167 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs72736123 | 0.88[EUR][1000 genomes] |
| rs72736141 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs876716 | 0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv872894 | chr1:195053221-195745968 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv872932 | chr1:195447286-195736070 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv872937 | chr1:195493538-195849028 | Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv1007203 | chr1:195672857-195902360 | Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
