Variant report

Variant	rs72736158
Chromosome Location	chr1:195780020-195780021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10754160	0.88[ASN][1000 genomes]
rs10801457	0.88[ASN][1000 genomes]
rs11587693	0.83[ASN][1000 genomes]
rs11587700	0.83[ASN][1000 genomes]
rs11802328	0.91[ASN][1000 genomes]
rs1576764	0.83[ASN][1000 genomes]
rs17626902	0.83[ASN][1000 genomes]
rs17673134	0.91[ASN][1000 genomes]
rs2942913	0.96[ASN][1000 genomes]
rs2989981	0.96[ASN][1000 genomes]
rs4304556	0.83[ASN][1000 genomes]
rs4335360	1.00[ASN][1000 genomes]
rs4514223	0.83[ASN][1000 genomes]
rs55707019	0.83[ASN][1000 genomes]
rs55894754	0.83[ASN][1000 genomes]
rs56012771	0.83[ASN][1000 genomes]
rs56067913	0.83[ASN][1000 genomes]
rs6671971	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs72734142	0.83[ASN][1000 genomes]
rs72734164	0.83[ASN][1000 genomes]
rs72734165	0.83[ASN][1000 genomes]
rs72734166	0.83[ASN][1000 genomes]
rs72734169	0.83[ASN][1000 genomes]
rs72734170	0.83[ASN][1000 genomes]
rs7415128	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872937	chr1:195493538-195849028	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1007203	chr1:195672857-195902360	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv872941	chr1:195770204-195820337	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195764400-195789400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links