Variant report
| Variant | rs72737450 |
|---|---|
| Chromosome Location | chr15:58489713-58489714 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:58011774..58013283-chr15:58488881..58491774,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000240934 | TF binding region |
| ENSG00000261219 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs16939839 | 0.86[EUR][1000 genomes] |
| rs17240643 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs17240650 | 0.93[EUR][1000 genomes] |
| rs17240671 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs17821086 | 0.84[EUR][1000 genomes] |
| rs17821117 | 0.93[EUR][1000 genomes] |
| rs17821135 | 0.87[EUR][1000 genomes] |
| rs2271678 | 0.93[EUR][1000 genomes] |
| rs2292714 | 0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2414543 | 0.86[EUR][1000 genomes] |
| rs2414544 | 0.86[EUR][1000 genomes] |
| rs2414545 | 0.86[EUR][1000 genomes] |
| rs3784248 | 0.83[EUR][1000 genomes] |
| rs3784255 | 0.93[EUR][1000 genomes] |
| rs3825777 | 0.93[EUR][1000 genomes] |
| rs55672049 | 0.87[EUR][1000 genomes] |
| rs55808100 | 0.88[EUR][1000 genomes] |
| rs55832939 | 0.80[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs55860231 | 0.93[EUR][1000 genomes] |
| rs55885730 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs56099208 | 0.91[EUR][1000 genomes] |
| rs56141765 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs66717621 | 0.93[EUR][1000 genomes] |
| rs66881380 | 0.84[EUR][1000 genomes] |
| rs66896776 | 0.84[EUR][1000 genomes] |
| rs67670862 | 0.84[EUR][1000 genomes] |
| rs67683432 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7161943 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7179531 | 0.84[EUR][1000 genomes] |
| rs7181378 | 0.86[EUR][1000 genomes] |
| rs72743586 | 0.86[EUR][1000 genomes] |
| rs935204 | 0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1047246 | chr15:58375607-58707158 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv833024 | chr15:58447459-58621963 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | esv2752813 | chr15:58461006-58507064 | Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv1050473 | chr15:58479888-58562270 | Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
