Variant report

Variant	rs72740663
Chromosome Location	chr1:215942047-215942048
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2820723	1.00[ASN][1000 genomes]
rs2820724	1.00[ASN][1000 genomes]
rs4308955	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55908750	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66696858	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72740647	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72740648	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72740650	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72740654	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72742724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72742726	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9430146	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv468116	chr1:215922860-215947408	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv549191	chr1:215922860-215947408	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215928200-215948800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:215940000-215943000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr1:215940000-215943200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr1:215940400-215943000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr1:215940600-215942400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr1:215941200-215949800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:215941600-215942400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr1:215941600-215943200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:215942000-215948200	Weak transcription	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links