Variant report
| Variant | rs72742190 |
|---|---|
| Chromosome Location | chr15:53269895-53269896 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:53263219..53264943-chr15:53268673..53270555,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs56295439 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72728906 | 0.81[EUR][1000 genomes] |
| rs72728907 | 0.81[EUR][1000 genomes] |
| rs72728909 | 0.81[EUR][1000 genomes] |
| rs72728912 | 0.81[EUR][1000 genomes] |
| rs72728914 | 0.81[EUR][1000 genomes] |
| rs72728928 | 0.81[EUR][1000 genomes] |
| rs72728932 | 0.81[EUR][1000 genomes] |
| rs72728935 | 0.81[EUR][1000 genomes] |
| rs72728937 | 0.81[EUR][1000 genomes] |
| rs72728939 | 0.81[EUR][1000 genomes] |
| rs72742191 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72742193 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs72742195 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72744014 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72744016 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs8031886 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1048828 | chr15:53250883-53288794 | Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv833007 | chr15:53264564-53453525 | Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1052623 | chr15:53265803-53316510 | Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:53264200-53276800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
