Variant report

Variant	rs72742443
Chromosome Location	chr15:77284455-77284456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77282963..77284982-chr15:77290568..77292460,2	K562	blood:
2	chr15:77283555..77285967-chr15:77287143..77289785,2	K562	blood:
3	chr15:77283310..77284980-chr15:77285061..77287100,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140368	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv833058	chr15:77235895-77393640	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv517068	chr15:77254544-77381222	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	esv1808532	chr15:77257714-77332539	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1043017	chr15:77266776-77309938	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1035874	chr15:77266776-77328742	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	esv1822592	chr15:77283956-77332539	Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77274000-77287200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr15:77281200-77286400	Weak transcription	Colonic Mucosa	Colon
3	chr15:77281200-77286400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr15:77281400-77285800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr15:77281400-77286000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:77281400-77286400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr15:77281600-77284600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr15:77281600-77285600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr15:77281600-77285600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr15:77281600-77285600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:77281600-77285600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr15:77281600-77285600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr15:77281600-77285800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr15:77281600-77285800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr15:77281600-77286000	Weak transcription	Primary T cells from cord blood	blood
16	chr15:77281600-77286000	Weak transcription	Lung	lung
17	chr15:77281600-77286200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr15:77281600-77286400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:77281600-77287800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:77281600-77289000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr15:77281800-77284800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr15:77281800-77284800	Weak transcription	Brain Hippocampus Middle	brain
23	chr15:77281800-77285600	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr15:77281800-77285600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:77281800-77285800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr15:77281800-77286000	Weak transcription	Primary B cells from peripheral blood	blood
27	chr15:77281800-77286400	Weak transcription	Fetal Thymus	thymus
28	chr15:77281800-77287400	Weak transcription	Brain Anterior Caudate	brain
29	chr15:77281800-77287800	Weak transcription	Brain Angular Gyrus	brain
30	chr15:77281800-77288000	Weak transcription	Liver	Liver
31	chr15:77281800-77288600	Weak transcription	Left Ventricle	heart
32	chr15:77281800-77289000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr15:77282000-77284600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr15:77282000-77284600	Weak transcription	Spleen	Spleen
35	chr15:77282000-77285400	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr15:77282000-77285600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr15:77282000-77287200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr15:77282000-77287200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr15:77282000-77287400	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr15:77282000-77287400	Weak transcription	Right Ventricle	heart
41	chr15:77282000-77287600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr15:77283000-77287200	Enhancers	Pancreas	Pancrea
43	chr15:77283000-77291000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr15:77283200-77286800	Enhancers	Primary B cells from cord blood	blood
45	chr15:77283400-77285800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
46	chr15:77283400-77287000	Weak transcription	GM12878-XiMat	blood
47	chr15:77283600-77287600	Weak transcription	Right Atrium	heart
48	chr15:77284000-77287600	Enhancers	Placenta	Placenta
49	chr15:77284200-77285000	Enhancers	Rectal Smooth Muscle	rectum
50	chr15:77284200-77286000	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links