Variant report

Variant	rs72753587
Chromosome Location	chr9:100730046-100730047
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100726616..100730343-chr9:100734410..100737792,5	K562	blood:
2	chr9:100716579..100718542-chr9:100728846..100731409,2	K562	blood:
3	chr9:100725968..100732851-chr9:100740527..100746264,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136938	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10984297	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10984349	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10984375	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10984462	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10984478	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10984484	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10984499	0.91[ASN][1000 genomes]
rs10984588	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10984599	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10984601	0.85[AMR][1000 genomes]
rs1127703	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12235434	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12236440	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12237296	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12377604	0.85[ASN][1000 genomes]
rs1475695	0.81[ASN][1000 genomes]
rs1475696	0.84[ASN][1000 genomes]
rs17431934	0.85[ASN][1000 genomes]
rs3780416	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3780417	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3780418	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3780419	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4498663	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4618817	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67975003	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs68053069	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7024281	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7025609	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72753548	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72753572	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs755109	0.85[ASN][1000 genomes]
rs7864655	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	esv3375292	chr9:100729731-100730059	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100722600-100730800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr9:100729000-100732200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr9:100729600-100731000	Weak transcription	Fetal Thymus	thymus
4	chr9:100729600-100731600	Weak transcription	K562	blood
5	chr9:100730000-100731400	Weak transcription	Thymus	Thymus

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