Variant report
| Variant | rs72771737 |
|---|---|
| Chromosome Location | chr5:97882275-97882276 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:97880735..97882855-chr5:98107997..98110735,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000174136 | Chromatin interaction |
| ENSG00000246763 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs11241845 | 0.81[EUR][1000 genomes] |
| rs11241847 | 0.81[EUR][1000 genomes] |
| rs1156556 | 0.81[EUR][1000 genomes] |
| rs11738266 | 0.81[AMR][1000 genomes] |
| rs11951223 | 0.82[EUR][1000 genomes] |
| rs11954892 | 0.81[EUR][1000 genomes] |
| rs12188210 | 0.82[AMR][1000 genomes] |
| rs12521683 | 0.81[EUR][1000 genomes] |
| rs13152846 | 0.82[AMR][1000 genomes] |
| rs13166309 | 0.81[AMR][1000 genomes] |
| rs13166458 | 0.81[AMR][1000 genomes] |
| rs13169363 | 0.81[EUR][1000 genomes] |
| rs13173749 | 0.83[AMR][1000 genomes] |
| rs13177443 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1345572 | 0.81[EUR][1000 genomes] |
| rs1478455 | 0.81[EUR][1000 genomes] |
| rs1478456 | 0.81[EUR][1000 genomes] |
| rs1550808 | 0.80[AMR][1000 genomes] |
| rs1820767 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1820768 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1978419 | 0.81[EUR][1000 genomes] |
| rs2052519 | 0.81[EUR][1000 genomes] |
| rs2112144 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs35431649 | 0.81[EUR][1000 genomes] |
| rs4702992 | 0.83[AMR][1000 genomes] |
| rs4703106 | 0.81[EUR][1000 genomes] |
| rs4703121 | 0.81[EUR][1000 genomes] |
| rs59021930 | 0.80[EUR][1000 genomes] |
| rs62367545 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6863686 | 0.80[EUR][1000 genomes] |
| rs6865579 | 0.81[EUR][1000 genomes] |
| rs6868590 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6869049 | 0.81[EUR][1000 genomes] |
| rs7711931 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs7732536 | 0.81[EUR][1000 genomes] |
| rs929738 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882412 | chr5:97796120-97953719 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016611 | chr5:97873846-98035559 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv537816 | chr5:97873846-98035559 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 4 | esv3401686 | chr5:97881101-97900528 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
