Variant report

Variant	rs72773025
Chromosome Location	chr5:80819669-80819670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:80818057..80820183-chr5:80829963..80832323,2	K562	blood:
2	chr5:80818037..80820072-chr5:80821098..80823290,2	K562	blood:
3	chr5:80810187..80812295-chr5:80817394..80821079,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10045115	0.81[AMR][1000 genomes]
rs11950035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13355366	0.86[AMR][1000 genomes]
rs6865376	0.86[AMR][1000 genomes]
rs72773022	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72773026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1028498	chr5:80712364-80860430	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80779000-80830200	Weak transcription	Primary B cells from cord blood	blood
2	chr5:80779000-80834400	Weak transcription	Fetal Muscle Leg	muscle
3	chr5:80797000-80834000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr5:80798400-80820000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:80798400-80821400	Weak transcription	Thymus	Thymus
6	chr5:80798600-80826600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:80802600-80819800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:80803200-80834400	Weak transcription	Fetal Kidney	kidney
9	chr5:80803200-80835200	Weak transcription	GM12878-XiMat	blood
10	chr5:80803600-80875200	Weak transcription	Fetal Brain Female	brain
11	chr5:80809600-80820200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:80809800-80820000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:80812400-80826600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr5:80812400-80829200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr5:80812600-80821400	Weak transcription	HSMM	muscle
16	chr5:80815600-80821400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:80816600-80820200	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr5:80817000-80827400	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr5:80818000-80821800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr5:80818400-80822200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr5:80818600-80820200	Strong transcription	Fetal Thymus	thymus
22	chr5:80818600-80821800	Enhancers	Fetal Heart	heart
23	chr5:80819000-80820000	Weak transcription	Brain Angular Gyrus	brain
24	chr5:80819000-80820600	Weak transcription	Left Ventricle	heart
25	chr5:80819000-80820600	Weak transcription	Psoas Muscle	Psoas
26	chr5:80819000-80821400	Weak transcription	Dnd41	blood
27	chr5:80819400-80821000	Enhancers	Brain Substantia Nigra	brain
28	chr5:80819600-80821800	Enhancers	Cortex derived primary cultured neurospheres	brain

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