Variant report

Variant	rs72784022
Chromosome Location	chr5:118153378-118153379
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12108713	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12109512	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12109542	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12109733	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12109968	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12109982	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12109987	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12109992	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1366457	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1510969	0.96[EUR][1000 genomes]
rs17144680	1.00[EUR][1000 genomes]
rs17144684	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17144687	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17144694	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17144711	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs17144840	0.92[EUR][1000 genomes]
rs17164564	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2161348	0.96[EUR][1000 genomes]
rs28550966	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34164145	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56292256	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032241	chr5:117900051-118157400	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv882769	chr5:118088385-118154368	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv599562	chr5:118122504-118230640	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118127000-118160000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:118143400-118178200	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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