Variant report

Variant	rs72791375
Chromosome Location	chr10:55349236-55349237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12256830	0.94[ASN][1000 genomes]
rs1387659	0.86[ASN][1000 genomes]
rs1489843	0.86[ASN][1000 genomes]
rs1932011	0.86[ASN][1000 genomes]
rs2891482	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs386136	0.89[ASN][1000 genomes]
rs426872	0.89[ASN][1000 genomes]
rs4271302	0.86[ASN][1000 genomes]
rs439136	0.89[ASN][1000 genomes]
rs448075	0.89[ASN][1000 genomes]
rs4935452	0.81[ASN][1000 genomes]
rs56105712	0.94[ASN][1000 genomes]
rs6481024	0.86[ASN][1000 genomes]
rs66643903	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72791377	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72791378	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72791380	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72791385	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72791386	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72791387	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72791390	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72791393	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72791394	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72793106	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72793107	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72793131	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9416285	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1044282	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv540631	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1043501	chr10:55186701-55516253	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv540632	chr10:55186701-55516253	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1050323	chr10:55190079-55546575	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv8665	chr10:55341562-55361281	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55349200-55352400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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