Variant report

Variant	rs72792821
Chromosome Location	chr2:37464393-37464394
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37455061..37456837-chr2:37463008..37464673,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11689186	0.85[EUR][1000 genomes]
rs12622740	0.85[ASN][1000 genomes]
rs12712528	0.82[ASN][1000 genomes]
rs17409947	0.94[EUR][1000 genomes]
rs17481834	0.94[EUR][1000 genomes]
rs2110963	0.98[EUR][1000 genomes]
rs2160394	0.98[EUR][1000 genomes]
rs2300885	0.94[EUR][1000 genomes]
rs2300892	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2302650	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3770763	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3819892	0.94[EUR][1000 genomes]
rs4670192	0.88[EUR][1000 genomes]
rs55991517	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56059107	0.96[EUR][1000 genomes]
rs61208496	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6726709	0.93[EUR][1000 genomes]
rs6743961	0.82[ASN][1000 genomes]
rs72792835	0.87[EUR][1000 genomes]
rs7560904	0.85[ASN][1000 genomes]
rs876461	0.91[EUR][1000 genomes]
rs9318	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37459800-37465000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr2:37460000-37468200	Weak transcription	Psoas Muscle	Psoas
3	chr2:37460000-37468600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr2:37460000-37471200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:37460000-37474000	Weak transcription	Colonic Mucosa	Colon
6	chr2:37460000-37495600	Weak transcription	Small Intestine	intestine
7	chr2:37460000-37501600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:37460200-37464600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:37460200-37464600	Weak transcription	NHLF	lung
10	chr2:37460200-37465200	Weak transcription	Primary B cells from cord blood	blood
11	chr2:37460200-37466600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr2:37460200-37468400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr2:37460200-37468800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr2:37460200-37528600	Weak transcription	Stomach Mucosa	stomach
15	chr2:37460400-37464400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr2:37460400-37464400	Weak transcription	Adipose Nuclei	Adipose
17	chr2:37460400-37464400	Weak transcription	Liver	Liver
18	chr2:37460400-37464400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr2:37460400-37464400	Weak transcription	Osteobl	bone
20	chr2:37460400-37464600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:37460400-37464600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr2:37460400-37464600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr2:37460400-37464600	Weak transcription	Brain Anterior Caudate	brain
24	chr2:37460400-37464600	Weak transcription	Fetal Lung	lung
25	chr2:37460400-37464600	Weak transcription	Placenta	Placenta
26	chr2:37460400-37464600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr2:37460400-37464600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr2:37460400-37464800	Weak transcription	Fetal Intestine Large	intestine
29	chr2:37460400-37465200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr2:37460400-37465200	Weak transcription	Fetal Brain Female	brain
31	chr2:37460400-37465400	Weak transcription	Lung	lung
32	chr2:37460400-37465600	Weak transcription	Left Ventricle	heart
33	chr2:37460400-37465800	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr2:37460400-37466000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr2:37460400-37466200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr2:37460400-37466200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr2:37460400-37467200	Weak transcription	Esophagus	oesophagus
38	chr2:37460400-37467200	Weak transcription	Pancreas	Pancrea
39	chr2:37460400-37467400	Weak transcription	NHDF-Ad	bronchial
40	chr2:37460400-37468000	Weak transcription	HUVEC	blood vessel
41	chr2:37460400-37468400	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr2:37460400-37468400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr2:37460400-37468400	Weak transcription	NH-A	brain
44	chr2:37460400-37468600	Weak transcription	Brain Angular Gyrus	brain
45	chr2:37460400-37468600	Weak transcription	Brain Germinal Matrix	brain
46	chr2:37460400-37468800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr2:37460400-37468800	Weak transcription	Rectal Smooth Muscle	rectum
48	chr2:37460400-37469000	Weak transcription	HMEC	breast
49	chr2:37460400-37470600	Weak transcription	Fetal Kidney	kidney
50	chr2:37460400-37471200	Weak transcription	Brain Hippocampus Middle	brain

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