Variant report

Variant	rs72793269
Chromosome Location	chr10:53000422-53000423
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs41274088	1.00[AFR][1000 genomes]
rs56268218	1.00[AFR][1000 genomes]
rs72793270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	esv2757383	chr10:52995974-53015583	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	esv2759750	chr10:52995974-53015583	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	esv1822881	chr10:52999550-53002930	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52991200-53003000	Weak transcription	Left Ventricle	heart
2	chr10:52992000-53006200	Weak transcription	Aorta	Aorta
3	chr10:52992200-53003600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:52992200-53009600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:52992800-53002200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:52993000-53003200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr10:52994000-53003200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr10:52999800-53001800	Weak transcription	Psoas Muscle	Psoas
9	chr10:52999800-53004600	Weak transcription	Right Atrium	heart
10	chr10:53000000-53004400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr10:53000400-53002000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:53000400-53004200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links