Variant report
| Variant | rs72802280 |
|---|---|
| Chromosome Location | chr5:151434291-151434292 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10079263 | 0.90[ASN][1000 genomes] |
| rs10477008 | 0.81[ASN][1000 genomes] |
| rs10477009 | 0.81[ASN][1000 genomes] |
| rs11743674 | 0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11956862 | 0.81[ASN][1000 genomes] |
| rs1445675 | 0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1445676 | 0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2161387 | 0.94[EUR][1000 genomes] |
| rs34268622 | 0.81[ASN][1000 genomes] |
| rs3936461 | 0.90[ASN][1000 genomes] |
| rs4958510 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs58269055 | 0.90[ASN][1000 genomes] |
| rs61322394 | 0.90[ASN][1000 genomes] |
| rs6579917 | 0.90[ASN][1000 genomes] |
| rs66860936 | 0.81[ASN][1000 genomes] |
| rs6862288 | 0.90[ASN][1000 genomes] |
| rs6868689 | 0.90[ASN][1000 genomes] |
| rs6878015 | 0.90[ASN][1000 genomes] |
| rs72802265 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs72802277 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs72802278 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs72802298 | 0.81[ASN][1000 genomes] |
| rs72802301 | 0.81[ASN][1000 genomes] |
| rs72804303 | 0.81[ASN][1000 genomes] |
| rs7715309 | 0.90[ASN][1000 genomes] |
| rs7730910 | 0.81[ASN][1000 genomes] |
| rs7731576 | 0.90[ASN][1000 genomes] |
| rs9324717 | 0.90[ASN][1000 genomes] |
| rs9324718 | 0.81[ASN][1000 genomes] |
| rs9884992 | 0.90[ASN][1000 genomes] |
| rs9885356 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1020899 | chr5:151412785-151516788 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv526375 | chr5:151423814-151438217 | ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:151432600-151450000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
