Variant report

Variant	rs72802298
Chromosome Location	chr5:151466808-151466809
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10079263	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10477008	1.00[ASN][1000 genomes]
rs10477009	1.00[ASN][1000 genomes]
rs11956862	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs256151	0.90[ASN][1000 genomes]
rs34268622	1.00[ASN][1000 genomes]
rs3936461	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58269055	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61322394	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6579917	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66860936	1.00[ASN][1000 genomes]
rs6862288	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6868689	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6878015	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6878804	0.90[ASN][1000 genomes]
rs72802280	0.81[ASN][1000 genomes]
rs72802301	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72804303	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7713100	0.96[EUR][1000 genomes]
rs7715309	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7730910	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7731576	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9324717	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9324718	1.00[ASN][1000 genomes]
rs9884992	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9885356	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020899	chr5:151412785-151516788	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv5071	chr5:151438330-151472013	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv508384	chr5:151438582-151487326	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2760935	chr5:151463117-151586051	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151466800-151467000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:151466800-151469200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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