Variant report

Variant	rs72806089
Chromosome Location	chr2:63906145-63906146
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:63905199..63906853-chr2:64102018..64104600,2	MCF-7	breast:
2	chr2:63902199..63904548-chr2:63905290..63907051,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10187024	0.92[ASN][1000 genomes]
rs10496102	0.88[EUR][1000 genomes]
rs12470478	0.84[EUR][1000 genomes]
rs12476015	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13405855	0.86[ASN][1000 genomes]
rs13417333	0.92[ASN][1000 genomes]
rs17554675	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17617855	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17618390	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17619012	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17619354	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2168275	0.92[ASN][1000 genomes]
rs2278718	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2422005	0.92[ASN][1000 genomes]
rs4567921	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4671522	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4671527	0.87[ASN][1000 genomes]
rs6546020	0.83[ASN][1000 genomes]
rs6546021	0.92[ASN][1000 genomes]
rs6546023	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6722981	0.86[ASN][1000 genomes]
rs6723088	0.86[ASN][1000 genomes]
rs6723875	0.92[ASN][1000 genomes]
rs72806004	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72806010	0.84[EUR][1000 genomes]
rs72806027	0.84[EUR][1000 genomes]
rs72806055	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72806058	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72806082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72806095	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72821628	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72821630	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72821631	0.80[EUR][1000 genomes]
rs72821632	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63896400-63907200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr2:63896400-63911400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:63901000-63907000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:63901400-63907400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:63904000-63906400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:63905600-63909200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:63905800-63907200	Enhancers	NHEK	skin
8	chr2:63905800-63907400	Weak transcription	Adipose Nuclei	Adipose
9	chr2:63905800-63909200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links