Variant report

Variant	rs72807740
Chromosome Location	chr2:56072066-56072067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10173540	0.87[ASN][1000 genomes]
rs10180043	0.96[ASN][1000 genomes]
rs10196888	0.87[ASN][1000 genomes]
rs12104451	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13394642	0.88[ASN][1000 genomes]
rs13409792	0.83[ASN][1000 genomes]
rs13426650	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099188	0.96[ASN][1000 genomes]
rs28744383	0.88[ASN][1000 genomes]
rs4519567	0.96[ASN][1000 genomes]
rs58754091	0.90[ASN][1000 genomes]
rs6723695	0.87[ASN][1000 genomes]
rs72807739	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7577580	0.87[ASN][1000 genomes]
rs7604558	0.88[ASN][1000 genomes]
rs875997	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56066800-56082600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:56069000-56072200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:56070200-56073000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr2:56070600-56073000	Weak transcription	Pancreas	Pancrea
5	chr2:56070600-56075400	Weak transcription	HUVEC	blood vessel
6	chr2:56070600-56078400	Weak transcription	Ovary	ovary
7	chr2:56071400-56072400	Enhancers	A549	lung
8	chr2:56071400-56084000	Weak transcription	HSMM	muscle
9	chr2:56071600-56075200	Weak transcription	NHLF	lung
10	chr2:56071600-56075400	Weak transcription	Stomach Mucosa	stomach
11	chr2:56071600-56077200	Weak transcription	Hela-S3	cervix
12	chr2:56071600-56082600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:56071600-56082600	Weak transcription	NHEK	skin
14	chr2:56071600-56086800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:56071800-56084000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr2:56072000-56073200	Enhancers	Adipose Nuclei	Adipose
17	chr2:56072000-56075400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr2:56072000-56082800	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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