Variant report
| Variant | rs72823159 |
|---|---|
| Chromosome Location | chr2:77220026-77220027 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1348832 | 0.97[ASN][1000 genomes] |
| rs1348833 | 0.97[ASN][1000 genomes] |
| rs1446716 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17013541 | 1.00[ASN][1000 genomes] |
| rs2028914 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59946045 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61391187 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs72807245 | 0.86[EUR][1000 genomes] |
| rs72807251 | 0.86[EUR][1000 genomes] |
| rs72807256 | 0.86[EUR][1000 genomes] |
| rs72823111 | 0.81[ASN][1000 genomes] |
| rs72823116 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs72823136 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72823138 | 1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72823139 | 1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72823141 | 1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72823142 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs72823144 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72823152 | 1.00[ASN][1000 genomes] |
| rs72823157 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72823158 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72823168 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72823173 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72823179 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834266 | chr2:77120236-77287504 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv949670 | chr2:77125218-77712607 | Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv519950 | chr2:77213103-77256291 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv829468 | chr2:77216448-77224533 | Weak transcription Enhancers | lncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv961764 | chr2:77216571-77228053 | Enhancers Weak transcription | lncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:77214000-77220400 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
