Variant report

Variant	rs72827833
Chromosome Location	chr6:16748948-16748949
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:16745643..16749124-chr6:16751371..16755067,4	MCF-7	breast:
2	chr6:16746821..16749165-chr6:16759467..16762850,3	MCF-7	breast:
3	chr6:16747791..16751761-chr6:16752164..16756534,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000229931	Chromatin interaction
ENSG00000124788	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16879071	0.85[EUR][1000 genomes]
rs72827835	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532022	chr6:16448152-16825567	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031423	chr6:16467215-16823725	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16732200-16754800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:16737600-16759400	Weak transcription	Thymus	Thymus
3	chr6:16738000-16749800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:16739000-16752200	Weak transcription	HUVEC	blood vessel
5	chr6:16741200-16758200	Enhancers	Fetal Heart	heart
6	chr6:16743000-16749400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:16743000-16757200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:16743000-16759600	Weak transcription	Spleen	Spleen
9	chr6:16743400-16750800	Enhancers	Brain Substantia Nigra	brain
10	chr6:16743800-16757200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:16744000-16750400	Enhancers	Brain Angular Gyrus	brain
12	chr6:16744200-16749200	Enhancers	Brain Anterior Caudate	brain
13	chr6:16744800-16749800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:16744800-16749800	Weak transcription	Esophagus	oesophagus
15	chr6:16745000-16750000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:16745000-16759600	Weak transcription	Placenta	Placenta
17	chr6:16745400-16749200	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr6:16745600-16750200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:16745800-16749000	Enhancers	Fetal Intestine Small	intestine
20	chr6:16745800-16749000	Enhancers	Small Intestine	intestine
21	chr6:16746000-16750200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:16746000-16751600	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr6:16746200-16750000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr6:16746200-16751400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr6:16746200-16758400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr6:16746400-16749200	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr6:16746400-16750400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:16746400-16752600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr6:16746400-16756800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:16746400-16758600	Weak transcription	Primary T cells from cord blood	blood
31	chr6:16746400-16758800	Weak transcription	Fetal Thymus	thymus
32	chr6:16746800-16750200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr6:16746800-16758600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr6:16747000-16749200	Enhancers	NH-A	brain
35	chr6:16747000-16752600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr6:16747200-16749400	Strong transcription	GM12878-XiMat	blood
37	chr6:16747200-16751400	Weak transcription	Hela-S3	cervix
38	chr6:16747400-16749000	Strong transcription	Primary hematopoietic stem cells	blood
39	chr6:16747400-16750000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr6:16747400-16750600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr6:16747600-16749000	Genic enhancers	Liver	Liver
42	chr6:16747800-16750400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
43	chr6:16748000-16749800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr6:16748000-16751400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr6:16748200-16749000	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr6:16748200-16749000	Enhancers	Muscle Satellite Cultured Cells	--
47	chr6:16748200-16749000	Enhancers	NHDF-Ad	bronchial
48	chr6:16748200-16749200	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr6:16748200-16749200	Genic enhancers	Fetal Lung	lung
50	chr6:16748200-16749800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links